View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11794_high_11 (Length: 462)
Name: NF11794_high_11
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 12 - 446
Target Start/End: Original strand, 37442964 - 37443394
Alignment:
| Q |
12 |
tgagatgaattgtgcaccatggttctgctaaaaacttttcaacctacatcaacacttttaatcatgaagctaagaatcaaatgtcctcgccgtctagtct |
111 |
Q |
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| T |
37442964 |
tgagatgaattgtgcaccatggttctgctaaaaacttttcaacctacatcaacacttttaatcatgaagctaaaaatcaaatgtcctcgccgtctagtct |
37443063 |
T |
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| Q |
112 |
tgtatattaatttctctatcgtgattatgattcaggccccattattattccagccacatatccaatatagatgtagggtgggagtaaaaatgaaaaatgc |
211 |
Q |
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| T |
37443064 |
tgtatattaatttctctatcgtaattatgattcaggccccattattattccagccacatatccaatatagatgtagggtgggagtaaaaatgaaaaatgc |
37443163 |
T |
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| Q |
212 |
ttgtatataattgattacataggtatagatatcactcaattacttcttttatgtcatcgatcatatataaactaagcatgtctaatctaattgaatgcac |
311 |
Q |
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| T |
37443164 |
ttg--tataattgattacataggtatagatatcactcaattacttcttttatgtcatcgatcatatataaactaagcatgtctaatctaattgaatgcac |
37443261 |
T |
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| Q |
312 |
tattatcttttatacataacctagctaaaatatttccctggtaatgtttaaagttcaatttagtaacaggaaagcatgttctagcaagtttataagcttc |
411 |
Q |
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| T |
37443262 |
tattatcttttatacataacctagctaaaatatttccctggtaatgtttaaagttcaatttagtaacaggaaagcatgttctggcaagtt--taagcttc |
37443359 |
T |
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| Q |
412 |
aactttttcttcttcaattaaacattaaaagaaat |
446 |
Q |
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| T |
37443360 |
aactttttcttcttcaattaaacattaaaagaaat |
37443394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 47 - 152
Target Start/End: Original strand, 34941322 - 34941424
Alignment:
| Q |
47 |
ttttcaacctacatcaacacttttaatcatgaagctaagaatcaaatgtcctc-gccgtctagtcttgtatattaatttctctatcgtgattatgattca |
145 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| ||| | |||||||||||| | |
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| T |
34941322 |
ttttcaacctacatcaacacttttaatcatgaagctaagaatcaaatgtcctcagcagtctagtc----gtattaatttttctttggtgattatgattta |
34941417 |
T |
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| Q |
146 |
ggcccca |
152 |
Q |
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||||||| |
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| T |
34941418 |
ggcccca |
34941424 |
T |
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