View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11794_high_13 (Length: 440)
Name: NF11794_high_13
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Original strand, 7785920 - 7786336
Alignment:
| Q |
18 |
aggattatgttgattaacttgtaattcaatttgtgtagttgataattgagatttgtgagcatgttaatcgtttacggcaatcttgaccacactaggagct |
117 |
Q |
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| T |
7785920 |
aggattatgttgattaacttgtaattcaatttgtgtagttgataattgagatttgtgagcatgttaatcgtttacggcaatcttgaccacactaggagct |
7786019 |
T |
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| Q |
118 |
aatccacattatagtctttgtatgagaaaataaatgaaaatatttgtccaaatgtataaatgtttatctttaccgtttttaattatcctacatgcttaaa |
217 |
Q |
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| T |
7786020 |
aatccacattatagtctttgtatgagaaaataaatgaaaatatttgtccaaatgtataaatgtttatctttaccgtttttaattatcctacatgcttaaa |
7786119 |
T |
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| Q |
218 |
agttattttcttccatatatattgggggagttacctagacttatatacaacttgattcgatattccttaccttctttggttagtggaagctaaatattga |
317 |
Q |
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| T |
7786120 |
agttattttcttccatatatattgggggagttacctagacttatatacaacttgattcgatattccttaccttctttggttagtggaagctaaatattga |
7786219 |
T |
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| Q |
318 |
gatatttctactgtaatagactttagnnnnnnnnggttacgtaatagactttagttgaa-------aaatggtcatatttggctaccatttttctgtaag |
410 |
Q |
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| T |
7786220 |
gatatttctactgtaatagactttagttttttttggttacgtaatagactttagttgaatttgaataaatggtcatatttggctaccatttttctgtaag |
7786319 |
T |
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| Q |
411 |
tagatcatagcacaggt |
427 |
Q |
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| T |
7786320 |
tagatcatagcacaggt |
7786336 |
T |
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