View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11794_high_17 (Length: 389)

Name: NF11794_high_17
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11794_high_17
NF11794_high_17
[»] chr8 (7 HSPs)
chr8 (15-286)||(39047208-39047484)
chr8 (101-210)||(5076263-5076372)
chr8 (101-211)||(4412597-4412707)
chr8 (215-272)||(9512438-9512495)
chr8 (102-179)||(37226988-37227065)
chr8 (161-214)||(5015426-5015479)
chr8 (100-137)||(35161494-35161531)
[»] chr1 (12 HSPs)
chr1 (100-211)||(1181497-1181608)
chr1 (100-214)||(16313900-16314014)
chr1 (101-214)||(7014985-7015098)
chr1 (117-215)||(43514353-43514451)
chr1 (100-179)||(12068014-12068093)
chr1 (109-196)||(9355411-9355498)
chr1 (100-210)||(49000783-49000893)
chr1 (101-211)||(33296425-33296535)
chr1 (109-166)||(16315368-16315425)
chr1 (110-182)||(25901345-25901417)
chr1 (101-182)||(25901396-25901477)
chr1 (121-210)||(44490679-44490768)
[»] chr5 (7 HSPs)
chr5 (101-211)||(12143809-12143919)
chr5 (101-214)||(29195198-29195311)
chr5 (100-214)||(35048688-35048801)
chr5 (101-214)||(2743853-2743966)
chr5 (109-205)||(20882908-20883004)
chr5 (100-211)||(13275031-13275142)
chr5 (162-214)||(40018105-40018157)
[»] chr4 (16 HSPs)
chr4 (109-211)||(22923321-22923423)
chr4 (109-211)||(22927974-22928076)
chr4 (109-211)||(22984253-22984355)
chr4 (109-211)||(22997841-22997943)
chr4 (100-214)||(54185607-54185721)
chr4 (101-213)||(12657194-12657308)
chr4 (100-214)||(45864951-45865065)
chr4 (101-214)||(1939365-1939478)
chr4 (114-211)||(32304853-32304950)
chr4 (101-190)||(50333980-50334069)
chr4 (100-211)||(49285492-49285603)
chr4 (100-213)||(41420632-41420743)
chr4 (215-273)||(43138908-43138966)
chr4 (122-214)||(156058-156150)
chr4 (219-270)||(16935543-16935594)
chr4 (167-214)||(21283799-21283846)
[»] chr6 (4 HSPs)
chr6 (100-205)||(1031791-1031896)
chr6 (100-211)||(7527068-7527179)
chr6 (100-214)||(35018739-35018853)
chr6 (167-215)||(4410234-4410282)
[»] chr2 (4 HSPs)
chr2 (100-214)||(19380219-19380333)
chr2 (100-214)||(5848090-5848204)
chr2 (109-211)||(11816083-11816185)
chr2 (162-205)||(187267-187310)
[»] chr7 (4 HSPs)
chr7 (101-214)||(44226520-44226633)
chr7 (109-212)||(432933-433036)
chr7 (101-211)||(23943729-23943839)
chr7 (215-275)||(47441624-47441684)
[»] chr3 (6 HSPs)
chr3 (100-211)||(46637060-46637171)
chr3 (100-212)||(46182936-46183048)
chr3 (162-214)||(30842114-30842166)
chr3 (161-215)||(20513508-20513562)
chr3 (100-211)||(34436977-34437088)
chr3 (122-214)||(53772300-53772392)
[»] scaffold0001 (1 HSPs)
scaffold0001 (162-214)||(185436-185488)
[»] scaffold0010 (1 HSPs)
scaffold0010 (162-212)||(28599-28649)
[»] scaffold0015 (1 HSPs)
scaffold0015 (167-211)||(33592-33636)


Alignment Details
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 15 - 286
Target Start/End: Complemental strand, 39047484 - 39047208
Alignment:
Q  15 ggacatcataggtgtggacttccaaaagatcactctatggtg--cttttcactattgagaaaggattacattacatannnnnnnnnnagaattctactct 112  Q
    |||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||| ||||||| |||||          ||||||||  |||    
T  39047484 ggacatcataggtgtggacttccaaaagatcactgtatggtgtgcttttcactattgagaaag-attacat-acatatttttttt--agaattctgttct 39047389  T
Q  113 ccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgc 212  Q
    ||||||| ||||||||  ||||||| |||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  39047388 ccacccaacacattttattcgcgccctacaatcgttttaaatttatccttgcgctagttaactaacgcaagtgaaaaactatgcgttagttaactaacgc 39047289  T
Q  213 tg-------taagtaacgcaagtgttaaactctgtattacttaacgaacgccgcgtgggttaactcacgctcgaataaaac 286  Q
    ||       ||| |||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||| |||||||||    
T  39047288 tgcgcaggttaaataacgcaagtgttaaactctgtgttacttaacgaatgccgtgtgggttaactcacgctggaataaaac 39047208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 101 - 210
Target Start/End: Complemental strand, 5076372 - 5076263
Alignment:
Q  101 gaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtta 200  Q
    ||||||| |||||||||| |||||| ||||||||||||| ||| ||||| ||||||| ||||||| |||||||||||||||| || ||||||||||| ||    
T  5076372 gaattctgctctccaccctgcacatgttgctcgcgccttgcagccgtttcaaatttaccattgcgttagttaactaacgcaaatgtaaaactatgcgcta 5076273  T
Q  201 gttaattaac 210  Q
    ||||| ||||    
T  5076272 gttaactaac 5076263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 4412597 - 4412707
Alignment:
Q  101 gaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtta 200  Q
    ||||||| ||||  ||||||||||||||||||||||| | ||| ||||  ||||||| | |||||||| |||||| |||||| || ||||||||||| ||    
T  4412597 gaattctgctctttacccagcacattttgctcgcgccctgcagccgttccaaatttacctttgcgctaattaactcacgcaagtgtaaaactatgcgcta 4412696  T
Q  201 gttaattaacg 211  Q
     |||| |||||    
T  4412697 attaactaacg 4412707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 9512495 - 9512438
Alignment:
Q  215 taagtaacgcaagtgttaaactctgtattacttaacgaacgccgcgtgggttaactca 272  Q
    |||||||||||||||||||||||||| ||| ||||| ||||| ||||| |||||||||    
T  9512495 taagtaacgcaagtgttaaactctgtgttatttaactaacgctgcgtgagttaactca 9512438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 37226988 - 37227065
Alignment:
Q  102 aattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacg 179  Q
    |||||| |||| |||||||||||||||||||||||| | ||| | ||  ||||||| | ||| |||||||||||||||    
T  37226988 aattctgctcttcacccagcacattttgctcgcgccctgcagccattccaaatttacctttgtgctagttaactaacg 37227065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 5015426 - 5015479
Alignment:
Q  161 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctg 214  Q
    ||||| |||||||||||||||  || ||||||||||| ||||||| ||||||||    
T  5015426 ttgcgttagttaactaacgcacgtgtaaaactatgcgctagttaactaacgctg 5015479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 35161494 - 35161531
Alignment:
Q  100 agaattctactctccacccagcacattttgctcgcgcc 137  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  35161494 agaattctactcttcaccctgcacattttgctcgcgcc 35161531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 1181608 - 1181497
Alignment:
Q  100 agaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtt 199  Q
    |||||||| ||||||||||||||||||||||||||| | ||||||| ||| ||||||| | |||||||||||||||||||||| ||||||||||||||||    
T  1181608 agaattctgctctccacccagcacattttgctcgcgtcctacagtcttttcaaatttacccttgcgctagttaactaacgcaagtgaaaaactatgcgtt 1181509  T
Q  200 agttaattaacg 211  Q
    |||||| |||||    
T  1181508 agttaactaacg 1181497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 100 - 214
Target Start/End: Original strand, 16313900 - 16314014
Alignment:
Q  100 agaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtt 199  Q
    |||||| | ||||||||||||||||||||||||||| | | ||| ||||| ||||||| | |||||||||||||||||||||| ||||||||||||||||    
T  16313900 agaattatgctctccacccagcacattttgctcgcgtcatgcagccgtttcaaatttacccttgcgctagttaactaacgcaagtgaaaaactatgcgtt 16313999  T
Q  200 agttaattaacgctg 214  Q
    |||||| ||||||||    
T  16314000 agttaactaacgctg 16314014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 101 - 214
Target Start/End: Complemental strand, 7015098 - 7014985
Alignment:
Q  101 gaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtta 200  Q
    ||||||| ||||||||||||||||||||||||||||| | ||| ||||  ||||||| | |||||||||||||||||||||| |||||||||| ||||||    
T  7015098 gaattctgctctccacccagcacattttgctcgcgccctgcagccgttcgaaatttacccttgcgctagttaactaacgcaagtgaaaaactacgcgtta 7014999  T
Q  201 gttaattaacgctg 214  Q
    ||||| ||||||||    
T  7014998 gttaactaacgctg 7014985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 43514353 - 43514451
Alignment:
Q  117 ccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctgt 215  Q
    ||||||||||||||||||| | | ||| ||||||||||||| | ||||| |||||||||||||||| || ||||||||||  ||||||| |||| ||||    
T  43514353 ccagcacattttgctcgcgtcctgcagccgttttaaatttacccttgcgttagttaactaacgcaagtgtaaaactatgcactagttaagtaacactgt 43514451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 100 - 179
Target Start/End: Complemental strand, 12068093 - 12068014
Alignment:
Q  100 agaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacg 179  Q
    |||||| | ||||||||||||||||||||||||||||| | ||| ||||  ||||||||| ||||| |||||||||||||    
T  12068093 agaattatgctctccacccagcacattttgctcgcgccctgcagccgttccaaatttatccttgcgttagttaactaacg 12068014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 9355498 - 9355411
Alignment:
Q  109 ctctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgc 196  Q
    |||||||||| |||||||||||||||||| | |    ||||||| |||| | |||||||||||||||||||||| || ||||||||||    
T  9355498 ctctccaccctgcacattttgctcgcgccctgcgcctgttttaagtttacccttgcgctagttaactaacgcaagtgtaaaactatgc 9355411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 210
Target Start/End: Complemental strand, 49000893 - 49000783
Alignment:
Q  100 agaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtt 199  Q
    |||||| | |||| |||||||||||||||||||||||| |  || |||| |||||||| | |||| |||||||||| |||||| || |||  |||||| |    
T  49000893 agaattttgctcttcacccagcacattttgctcgcgccctgtagccgttctaaatttacccttgcactagttaactcacgcaagtgtaaatgtatgcgct 49000794  T
Q  200 agttaattaac 210  Q
    |||||| ||||    
T  49000793 agttaactaac 49000783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 33296425 - 33296535
Alignment:
Q  101 gaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtta 200  Q
    ||||||| |||| || ||||||||||||||||||||| ||||   |||  ||||||| | ||||| ||||||||| |||||| || |||  |||||| ||    
T  33296425 gaattctgctcttcatccagcacattttgctcgcgccctacatctgttccaaatttacccttgcgttagttaactcacgcaagtgtaaatgtatgcgcta 33296524  T
Q  201 gttaattaacg 211  Q
    ||||| |||||    
T  33296525 gttaactaacg 33296535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 16315425 - 16315368
Alignment:
Q  109 ctctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgc 166  Q
    |||||||||| |||||||||||||||||| ||||| ||||  ||||||||| ||||||    
T  16315425 ctctccaccctgcacattttgctcgcgccctacagccgttccaaatttatccttgcgc 16315368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 25901345 - 25901417
Alignment:
Q  110 tctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaa 182  Q
    |||||||||||||||||||||||||||| || || |||   ||||||| | ||||| |||||||||| |||||    
T  25901345 tctccacccagcacattttgctcgcgccctatagccgtaccaaatttacccttgcgttagttaactagcgcaa 25901417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 25901477 - 25901396
Alignment:
Q  101 gaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaa 182  Q
    ||||||| ||||||||| || ||||||||||| || | | |||||||   ||||| | | ||||||||||||||||||||||    
T  25901477 gaattctgctctccaccaagtacattttgctcacgtcctgcagtcgtaccaaattcacctttgcgctagttaactaacgcaa 25901396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 210
Target Start/End: Complemental strand, 44490768 - 44490679
Alignment:
Q  121 cacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaac 210  Q
    ||||||||||||||||| | ||| ||||  ||||||| | |||| |||||||||| |||||| || |||  |||||| ||||||| ||||    
T  44490768 cacattttgctcgcgccctgcagccgttccaaatttacccttgcactagttaactcacgcaagtgtaaatgtatgcgctagttaactaac 44490679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 12143809 - 12143919
Alignment:
Q  101 gaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtta 200  Q
    ||||||| ||||||||| ||||||||||||||||||| | ||| |||| |||||||| | |||||||||||||||||||||| |||||||||||| ||||    
T  12143809 gaattctgctctccacctagcacattttgctcgcgccctgcagccgttctaaatttacctttgcgctagttaactaacgcaagtgaaaaactatgtgtta 12143908  T
Q  201 gttaattaacg 211  Q
    ||||| |||||    
T  12143909 gttaactaacg 12143919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 101 - 214
Target Start/End: Original strand, 29195198 - 29195311
Alignment:
Q  101 gaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtta 200  Q
    ||||||| |||||||||||||| ||||||||||| || | | | ||||  ||||||| | |||||||||||||||||||||| |||||||||||||||||    
T  29195198 gaattctgctctccacccagcatattttgctcgctccctgcggccgttccaaatttacccttgcgctagttaactaacgcaagtgaaaaactatgcgtta 29195297  T
Q  201 gttaattaacgctg 214  Q
    ||||| ||||||||    
T  29195298 gttaactaacgctg 29195311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 100 - 214
Target Start/End: Original strand, 35048688 - 35048801
Alignment:
Q  100 agaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtt 199  Q
    |||||||| |||||||||||||||||||||||||| || | ||| ||||| ||||||| | ||||| ||||||| |||||||| |||||||| |||||||    
T  35048688 agaattctgctctccacccagcacattttgctcgctccctgcagccgtttcaaatttacccttgcgttagttaattaacgcaagtgaaaaac-atgcgtt 35048786  T
Q  200 agttaattaacgctg 214  Q
    |||||| ||||||||    
T  35048787 agttaactaacgctg 35048801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 214
Target Start/End: Complemental strand, 2743966 - 2743853
Alignment:
Q  101 gaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtta 200  Q
    ||||||| |||| |||||||||||||||||||| ||||| ||| ||||  ||||||||| ||||||||||||||| ||| || || |||  |||||| ||    
T  2743966 gaattctgctcttcacccagcacattttgctcgtgccttgcagccgttccaaatttatccttgcgctagttaactcacgtaagtgtaaatgtatgcgcta 2743867  T
Q  201 gttaattaacgctg 214  Q
    ||||| ||||||||    
T  2743866 gttaactaacgctg 2743853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 109 - 205
Target Start/End: Original strand, 20882908 - 20883004
Alignment:
Q  109 ctctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgttagttaa 205  Q
    |||||||||||||  ||||||||| |||| | ||| ||||  ||||||| | |||||||||||||||||||||| |||||||||||| |||||||||    
T  20882908 ctctccacccagcgtattttgctcacgccatgcagccgttccaaatttacccttgcgctagttaactaacgcaagtgaaaaactatgtgttagttaa 20883004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 13275142 - 13275031
Alignment:
Q  100 agaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtt 199  Q
    |||||||| |||| ||||| |||||||||||||||||| | ||  ||||  ||||||| ||||||||||||||||| |||||| || |||  |||| | |    
T  13275142 agaattctcctcttcaccccgcacattttgctcgcgccctgcaaccgttcaaaatttaccattgcgctagttaactcacgcaagtgtaaatgtatgtgct 13275043  T
Q  200 agttaattaacg 211  Q
    |||||| |||||    
T  13275042 agttaactaacg 13275031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 40018105 - 40018157
Alignment:
Q  162 tgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctg 214  Q
    |||| |||||||||||||||| || ||||||||||||||||||| ||| ||||    
T  40018105 tgcgttagttaactaacgcaagtgtaaaactatgcgttagttaactaatgctg 40018157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 22923423 - 22923321
Alignment:
Q  109 ctctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgttagttaatta 208  Q
    ||||||||||||||||||||||||||||||| ||| ||||  ||||||| | |||||||||||||||||||||| |||||||||||| ||||||||| ||    
T  22923423 ctctccacccagcacattttgctcgcgccttgcagccgttccaaatttacccttgcgctagttaactaacgcaagtgaaaaactatgtgttagttaacta 22923324  T
Q  209 acg 211  Q
    |||    
T  22923323 acg 22923321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 22928076 - 22927974
Alignment:
Q  109 ctctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgttagttaatta 208  Q
    ||||||||||||||||||||||||||||||| ||| ||||  ||||||| | |||||||||||||||||||||| |||||||||||| ||||||||| ||    
T  22928076 ctctccacccagcacattttgctcgcgccttgcagccgttccaaatttacccttgcgctagttaactaacgcaagtgaaaaactatgtgttagttaacta 22927977  T
Q  209 acg 211  Q
    |||    
T  22927976 acg 22927974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 22984355 - 22984253
Alignment:
Q  109 ctctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgttagttaatta 208  Q
    ||||||||||||||||||||||||||||||| ||| ||||  ||||||| | |||||||||||||||||||||| |||||||||||| ||||||||| ||    
T  22984355 ctctccacccagcacattttgctcgcgccttgcagccgttccaaatttacccttgcgctagttaactaacgcaagtgaaaaactatgtgttagttaacta 22984256  T
Q  209 acg 211  Q
    |||    
T  22984255 acg 22984253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 22997943 - 22997841
Alignment:
Q  109 ctctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgttagttaatta 208  Q
    ||||||||||||||||||||||||||||||| ||| ||||  ||||||| | |||||||||||||||||||||| |||||||||||| ||||||||| ||    
T  22997943 ctctccacccagcacattttgctcgcgccttgcagccgttccaaatttacccttgcgctagttaactaacgcaagtgaaaaactatgtgttagttaacta 22997844  T
Q  209 acg 211  Q
    |||    
T  22997843 acg 22997841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 54185721 - 54185607
Alignment:
Q  100 agaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtt 199  Q
    |||||||| |||||||||| ||| |||||||||||||| | ||| ||||| ||||||| | |||||||||||||||||||||| || ||||||||||| |    
T  54185721 agaattctgctctccaccctgcatattttgctcgcgccctgcagccgtttcaaatttacccttgcgctagttaactaacgcaagtgtaaaactatgcgct 54185622  T
Q  200 agttaattaacgctg 214  Q
    |||||| ||||||||    
T  54185621 agttaagtaacgctg 54185607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 101 - 213
Target Start/End: Complemental strand, 12657308 - 12657194
Alignment:
Q  101 gaattctactctccacccagcacattttgctcgcgc--cttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgt 198  Q
    ||||||| ||||||||||||||||||||||||||||  | | ||| ||||  ||||||| | |||||||||||||||||| ||| |||||||||||| ||    
T  12657308 gaattctgctctccacccagcacattttgctcgcgcgccctgcagccgttccaaatttacccttgcgctagttaactaacacaagtgaaaaactatgtgt 12657209  T
Q  199 tagttaattaacgct 213  Q
    ||||||| |||||||    
T  12657208 tagttaactaacgct 12657194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 45865065 - 45864951
Alignment:
Q  100 agaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtt 199  Q
    |||||||| || ||||||| |||||||||||||||||| | ||  |||| ||||||||   ||||||||||||||||| |||| || |||||||||||||    
T  45865065 agaattctgctatccaccctgcacattttgctcgcgccctgcaaccgttctaaatttactcttgcgctagttaactaatgcaagtgtaaaactatgcgtt 45864966  T
Q  200 agttaattaacgctg 214  Q
    |||||| ||||||||    
T  45864965 agttaagtaacgctg 45864951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 214
Target Start/End: Complemental strand, 1939478 - 1939365
Alignment:
Q  101 gaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtta 200  Q
    ||||||| ||||| ||||||||||||||||||||||| | ||| ||||  ||||||||| || ||||||||||||||||||| || |||   ||||| ||    
T  1939478 gaattctgctctctacccagcacattttgctcgcgccctgcagccgttccaaatttatccttacgctagttaactaacgcaagtgtaaatgcatgcgcta 1939379  T
Q  201 gttaattaacgctg 214  Q
    ||||| ||||||||    
T  1939378 gttaactaacgctg 1939365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 32304853 - 32304950
Alignment:
Q  114 cacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacg 211  Q
    ||||| |||||||||||||||| ||| ||| |||| |||||||| | ||||||||||||||| |||||| || ||||||||| ||||||||| |||||    
T  32304853 caccctgcacattttgctcgcgtcttgcagccgttctaaatttacccttgcgctagttaactcacgcaagtgtaaaactatgtgttagttaactaacg 32304950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 50333980 - 50334069
Alignment:
Q  101 gaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaa 190  Q
    ||||||| |||||||||| ||||||||||||||| || ||||  ||||  ||||||| | |||||||||||||||||||||| |||||||    
T  50333980 gaattctgctctccacccggcacattttgctcgcaccctacaaccgttccaaatttacccttgcgctagttaactaacgcaagtgaaaaa 50334069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 100 - 211
Target Start/End: Original strand, 49285492 - 49285603
Alignment:
Q  100 agaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtt 199  Q
    |||||||| || ||||||| |||||||||||||||| |||  || ||||||||||||| | ||||  || |||||||| |||| || ||||||||||| |    
T  49285492 agaattctgctttccaccctgcacattttgctcgcggcttgtagccgttttaaatttacccttgcattaattaactaatgcaagtgtaaaactatgcgct 49285591  T
Q  200 agttaattaacg 211  Q
    |||||| |||||    
T  49285592 agttaagtaacg 49285603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 213
Target Start/End: Complemental strand, 41420743 - 41420632
Alignment:
Q  100 agaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtt 199  Q
    ||||||||||||| ||||  ||| |||||| ||||||| | ||| ||||  |||||||   ||||||||||||| |||||||  || ||||||||||| |    
T  41420743 agaattctactcttcaccttgcatattttgttcgcgccatgcagccgttccaaatttactcttgcgctagttaagtaacgca--tgtaaaactatgcgct 41420646  T
Q  200 agttaattaacgct 213  Q
    |||||| |||||||    
T  41420645 agttaactaacgct 41420632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 43138908 - 43138966
Alignment:
Q  215 taagtaacgcaagtgttaaactctgtattacttaacgaacgccgcgtgggttaactcac 273  Q
    ||||| ||||||||||||||||| || ||||||||| ||||| ||||| ||||||||||    
T  43138908 taagtgacgcaagtgttaaactccgtgttacttaactaacgctgcgtgtgttaactcac 43138966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 214
Target Start/End: Original strand, 156058 - 156150
Alignment:
Q  122 acattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctg 214  Q
    |||||||||||||||| | ||| | ||  |||| |||| || || |||||||||||||||| || |||| |||| | ||||||||||||||||    
T  156058 acattttgctcgcgccctgcagccattccaaatatatccttacgttagttaactaacgcaagtgtaaaattatgtgctagttaattaacgctg 156150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 16935543 - 16935594
Alignment:
Q  219 taacgcaagtgttaaactctgtattacttaacgaacgccgcgtgggttaact 270  Q
    ||||||||||||||||||||||  |||||||| ||||| ||||| |||||||    
T  16935543 taacgcaagtgttaaactctgtgctacttaactaacgctgcgtgagttaact 16935594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 21283799 - 21283846
Alignment:
Q  167 tagttaactaacgcaattgaaaaactatgcgttagttaattaacgctg 214  Q
    |||||||||||||||| || ||||||||| ||||||||| ||||||||    
T  21283799 tagttaactaacgcaagtgtaaaactatgtgttagttaactaacgctg 21283846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 100 - 205
Target Start/End: Complemental strand, 1031896 - 1031791
Alignment:
Q  100 agaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtt 199  Q
    |||| ||| |||||||||||||||||||||||||| || | ||| ||||  ||||||| | |||||||||||||||||||||| |||||||||||| |||    
T  1031896 agaactctgctctccacccagcacattttgctcgcaccgtccagccgttccaaatttacccttgcgctagttaactaacgcaagtgaaaaactatgtgtt 1031797  T
Q  200 agttaa 205  Q
    ||||||    
T  1031796 agttaa 1031791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 7527179 - 7527068
Alignment:
Q  100 agaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtt 199  Q
    |||||| | |||| || |||| |||||||||||||||| | ||| |||| |||||||| | ||||||||||||||| |||||| || |||| |||| |||    
T  7527179 agaattatgctcttcatccagtacattttgctcgcgccctgcagccgttctaaatttacccttgcgctagttaactcacgcaagtgtaaaattatgtgtt 7527080  T
Q  200 agttaattaacg 211  Q
    |||||| |||||    
T  7527079 agttaactaacg 7527068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 35018853 - 35018739
Alignment:
Q  100 agaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtt 199  Q
    |||||||| |||| |||||| ||||||||||||||| | | ||| ||||  ||||||| | | || |||||||||| |||||| || |||||||||||||    
T  35018853 agaattctgctcttcacccaacacattttgctcgcgtcctgcagccgttccaaatttaccctcgcactagttaactcacgcaagtgtaaaactatgcgtt 35018754  T
Q  200 agttaattaacgctg 214  Q
    | |||| ||||||||    
T  35018753 atttaactaacgctg 35018739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 4410282 - 4410234
Alignment:
Q  167 tagttaactaacgcaattgaaaaactatgcgttagttaattaacgctgt 215  Q
    |||||||||||||||| || |||||||||  |||||||| |||||||||    
T  4410282 tagttaactaacgcaagtgtaaaactatgtattagttaactaacgctgt 4410234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 19380333 - 19380219
Alignment:
Q  100 agaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtt 199  Q
    |||||| | ||||||||||||||||||||||||||||| | ||| ||||  |||||||   |||||||||||||||||||||| || |||  ||||||||    
T  19380333 agaattttgctctccacccagcacattttgctcgcgccctgcagccgttccaaatttactcttgcgctagttaactaacgcaagtgtaaatgtatgcgtt 19380234  T
Q  200 agttaattaacgctg 214  Q
    |||||| ||||||||    
T  19380233 agttaactaacgctg 19380219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 5848204 - 5848090
Alignment:
Q  100 agaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtt 199  Q
    |||||||| || ||||||| ||||||||||||||||||   ||| | ||  ||||||| | ||||||||||||||||||| || || ||||||||||| |    
T  5848204 agaattctgctatccaccctgcacattttgctcgcgcccagcagccattccaaatttacccttgcgctagttaactaacgtaagtgtaaaactatgcgct 5848105  T
Q  200 agttaattaacgctg 214  Q
    |||||| ||||||||    
T  5848104 agttaagtaacgctg 5848090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 11816185 - 11816083
Alignment:
Q  109 ctctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgttagttaatta 208  Q
    |||| |||||| |||||||||||||  || | ||| ||||| ||||||| | ||||||||||||||| |||||| || ||||||||||  ||||||| ||    
T  11816185 ctcttcacccatcacattttgctcgtaccctgcagccgtttcaaatttacccttgcgctagttaactcacgcaagtgtaaaactatgcactagttaacta 11816086  T
Q  209 acg 211  Q
    |||    
T  11816085 acg 11816083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 187310 - 187267
Alignment:
Q  162 tgcgctagttaactaacgcaattgaaaaactatgcgttagttaa 205  Q
    |||| |||||||||||||||| || |||||||||||||||||||    
T  187310 tgcgttagttaactaacgcaagtgtaaaactatgcgttagttaa 187267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 101 - 214
Target Start/End: Complemental strand, 44226633 - 44226520
Alignment:
Q  101 gaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtta 200  Q
    ||||||| ||||||||||||||||||||| ||| ||| |  || ||||| ||||||| | |||| ||||||||| ||||||| |||||||||||| ||||    
T  44226633 gaattctgctctccacccagcacattttgttcgtgccctgtagccgtttcaaatttacccttgctctagttaaccaacgcaagtgaaaaactatgtgtta 44226534  T
Q  201 gttaattaacgctg 214  Q
    ||||| ||||||||    
T  44226533 gttaactaacgctg 44226520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 433036 - 432933
Alignment:
Q  109 ctctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgttagttaatta 208  Q
    |||||||||| ||||||||||||||| ||   ||| ||||| ||||||| | |||||||||||||||||||||| || |||| |||||||||||||| ||    
T  433036 ctctccaccctgcacattttgctcgcacccggcagccgtttcaaatttacccttgcgctagttaactaacgcaagtgtaaaattatgcgttagttaacta 432937  T
Q  209 acgc 212  Q
    ||||    
T  432936 acgc 432933  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 211
Target Start/End: Complemental strand, 23943839 - 23943729
Alignment:
Q  101 gaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtta 200  Q
    ||||||| |||| ||||| |||||||||||||||||  | ||| |||| ||||| || | ||||| |||||||||||||||  || ||||||||||| ||    
T  23943839 gaattctgctcttcaccctgcacattttgctcgcgctctgcagccgttctaaatatacccttgcgttagttaactaacgcaggtgtaaaactatgcgcta 23943740  T
Q  201 gttaattaacg 211  Q
    ||||| |||||    
T  23943739 gttaactaacg 23943729  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 47441624 - 47441684
Alignment:
Q  215 taagtaacgcaagtgttaaactctgtattacttaacgaacgccgcgtgggttaactcacgc 275  Q
    |||||||||||||||||||||||||  ||||||||| || || ||||| ||||||||||||    
T  47441624 taagtaacgcaagtgttaaactctgcgttacttaactaaagctgcgtgagttaactcacgc 47441684  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 46637171 - 46637060
Alignment:
Q  100 agaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtt 199  Q
    |||||| | ||||||| || |||||||||||||||||| | ||| ||||  ||||||||| || ||||||||||||||||||| || ||||||||||| |    
T  46637171 agaattatgctctccatcctgcacattttgctcgcgccatgcagccgttccaaatttatccttacgctagttaactaacgcaaatgtaaaactatgcgct 46637072  T
Q  200 agttaattaacg 211  Q
    |||||| |||||    
T  46637071 agttaagtaacg 46637060  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 100 - 212
Target Start/End: Original strand, 46182936 - 46183048
Alignment:
Q  100 agaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtt 199  Q
    |||||||| |||||||||  ||||||||||||| | || | ||| ||||| ||||||| | ||||||||||||| |||||||| || |||| ||||||||    
T  46182936 agaattctgctctccaccttgcacattttgctcacaccctgcagccgtttcaaatttacccttgcgctagttaaataacgcaagtgtaaaattatgcgtt 46183035  T
Q  200 agttaattaacgc 212  Q
    |||||| ||||||    
T  46183036 agttaactaacgc 46183048  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 30842166 - 30842114
Alignment:
Q  162 tgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctg 214  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||    
T  30842166 tgcgctagttaactaacgtaattgtaaacctatgcgttagttaactaacgctg 30842114  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 20513508 - 20513562
Alignment:
Q  161 ttgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctgt 215  Q
    ||||| |||||||||||||||| || ||||||||||| ||||||| |||||||||    
T  20513508 ttgcgttagttaactaacgcaagtgtaaaactatgcgatagttaactaacgctgt 20513562  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 211
Target Start/End: Original strand, 34436977 - 34437088
Alignment:
Q  100 agaattctactctccacccagcacattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgtt 199  Q
    |||||||| |||| || | ||||||||||||||||| | | ||| ||||  ||||||| | || |||||||||||| |||||| || |||  |||||| |    
T  34436977 agaattctgctcttcatcaagcacattttgctcgcgtcctgcagccgttccaaatttacccttacgctagttaactcacgcaagtgtaaatgtatgcgct 34437076  T
Q  200 agttaattaacg 211  Q
    |||||| |||||    
T  34437077 agttaactaacg 34437088  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 53772392 - 53772300
Alignment:
Q  122 acattttgctcgcgccttacagtcgttttaaatttatcattgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctg 214  Q
    |||||||||||||| | | |||  |||  ||||||| | ||| || |||||| ||||| || ||||||| |||| ||||||||||||||||||    
T  53772392 acattttgctcgcgtcctgcagctgttcaaaatttacccttgtgcaagttaattaacgtaagtgaaaaattatgtgttagttaattaacgctg 53772300  T

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Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 185436 - 185488
Alignment:
Q  162 tgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgctg 214  Q
    |||| |||||||||||||||| || ||||||||||||||||||| ||||||||    
T  185436 tgcgttagttaactaacgcaagtgtaaaactatgcgttagttaactaacgctg 185488  T

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Target: scaffold0010 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 28599 - 28649
Alignment:
Q  162 tgcgctagttaactaacgcaattgaaaaactatgcgttagttaattaacgc 212  Q
    |||| |||||||||||||||| || |||| |||||||||||||| ||||||    
T  28599 tgcgttagttaactaacgcaagtgtaaaattatgcgttagttaactaacgc 28649  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 33636 - 33592
Alignment:
Q  167 tagttaactaacgcaattgaaaaactatgcgttagttaattaacg 211  Q
    |||||||||||||||| || ||||| ||||||||||||| |||||    
T  33636 tagttaactaacgcaagtgtaaaacaatgcgttagttaactaacg 33592  T

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