View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11794_high_18 (Length: 383)
Name: NF11794_high_18
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 13870458 - 13870818
Alignment:
| Q |
18 |
aattacagaactcaaaaacagaagtttggcacaagatgcaaatccagcagttacaa---------tctagaaaactnnnnnnnn---tacaagtactagt |
105 |
Q |
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| T |
13870458 |
aattacataactcaaaaacagaagtttggcacaagatgcaaatccagcagttacaaagcaacatctctagaaaactaaaaaaaaaaatacaagtactagt |
13870557 |
T |
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| Q |
106 |
taaaccaaacataaactcaaactaaacataaaaggctgattaagcaaatacaaattcagggatgacaaccataaagcatcaattatggtctttgcaacta |
205 |
Q |
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| T |
13870558 |
taaaccaaacataaactcaaactaaacataaaaggctgattaagcaaatacaaattcagggatgacaaccataaagcatcaattatggtctttgcaacta |
13870657 |
T |
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| Q |
206 |
ctatcatggtgaggatgttgacgcttttgcgatggtggactcacacaactagaagcactatacatcctgattgtcgcttttgagatgtcatacgttgttt |
305 |
Q |
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| T |
13870658 |
ctatcatggtgaggatgttgacgcttttgcgatggtggactcgcacaactagaagcactatacatcctgattgtcgcttttgagatgtcatacgttgttt |
13870757 |
T |
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| Q |
306 |
caattgttccatcatatcgatcatttgttcatagaattgatccactcgctgttgagctttc |
366 |
Q |
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| T |
13870758 |
caattgttccaccatatcgatcatttgttcatagaattgatctactcgttgttgagctttc |
13870818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 14010583 - 14010943
Alignment:
| Q |
18 |
aattacagaactcaaaaacagaagtttggcacaagatgcaaatccagcagttacaa---------tctagaaaactnnnnnnnn---tacaagtactagt |
105 |
Q |
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| T |
14010583 |
aattacataactcaaaaacagaagtttggcacaagatgcaaatccagcagttacaaagcaacatctctagaaaactaaaaaaaaaaatacaagtactagt |
14010682 |
T |
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| Q |
106 |
taaaccaaacataaactcaaactaaacataaaaggctgattaagcaaatacaaattcagggatgacaaccataaagcatcaattatggtctttgcaacta |
205 |
Q |
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| T |
14010683 |
taaaccaaacataaactcaaactaaacataaaaggctgattaagcaaatacaaattcagggatgacaaccataaagcatcaattatggtctttgcaacta |
14010782 |
T |
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| Q |
206 |
ctatcatggtgaggatgttgacgcttttgcgatggtggactcacacaactagaagcactatacatcctgattgtcgcttttgagatgtcatacgttgttt |
305 |
Q |
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| T |
14010783 |
ctatcatggtgaggatgttgacgcttttgcgatggtggactcgcacaactagaagcactatacatcctgattgtcgcttttgagatgtcatacgttgttt |
14010882 |
T |
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| Q |
306 |
caattgttccatcatatcgatcatttgttcatagaattgatccactcgctgttgagctttc |
366 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
14010883 |
caattgttccaccatatcgatcatttgttcatagaattgatctactcgttgttgagctttc |
14010943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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