View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11794_high_25 (Length: 280)
Name: NF11794_high_25
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 262
Target Start/End: Complemental strand, 5467578 - 5467329
Alignment:
| Q |
13 |
gagatacctatgtgtgaggtcaagaggttgttacaaatgtcaagctgacgcaaactagtaagttttcctaatgaatgaggcaatttcccagttagttgat |
112 |
Q |
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| T |
5467578 |
gagatacctatgtgtgaggtcaagaggttgttactaatgtcaagctgacgcaaactagtaagttttcctaatgaatgaggcaatttcccagttagttgat |
5467479 |
T |
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| Q |
113 |
tataattcaaatctagaacctccaggctttggttgctacaagacaaggcctccattacttgagatatatcaatggttagatcattaaatgataggtctag |
212 |
Q |
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| T |
5467478 |
tataattcaaatctagaacctccaggctttggttgctacaagacaaggcctccattacttgagttatatcaatggttagatcattagatgataggtctag |
5467379 |
T |
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| Q |
213 |
attctgaagattgtgaagattccatttcccaagcatagaaggaaataaac |
262 |
Q |
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| T |
5467378 |
atttcgaagattgtgaagattccatttcccaagcatagaaggaaataaac |
5467329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 5477163 - 5477062
Alignment:
| Q |
63 |
caaactagtaagttttcctaatgaatgaggcaatttcccagttagttgattataattcaaatctagaacctccaggctttggttgctacaagacaaggcc |
162 |
Q |
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| T |
5477163 |
caaactagtaaatttccctaatgaatgaggcaatttcccagttagttgattaaaccttaaatctaaaaactctaggctttggttgctacaagacaatgcc |
5477064 |
T |
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| Q |
163 |
tc |
164 |
Q |
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|| |
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| T |
5477063 |
tc |
5477062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 5482212 - 5482127
Alignment:
| Q |
79 |
cctaatgaatgaggcaatttcccagttagttgattataattcaaatctagaacctccaggctttggttgctacaagacaaggcctc |
164 |
Q |
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| T |
5482212 |
cctaaagaatgaggcaatttcccagttagttgattactacccaaatttaaaaacttcaggctttggtttccacaagacaaggcctc |
5482127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 5496054 - 5495969
Alignment:
| Q |
79 |
cctaatgaatgaggcaatttcccagttagttgattataattcaaatctagaacctccaggctttggttgctacaagacaaggcctc |
164 |
Q |
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||||| |||||||||||||||||||||||||| |||||| ||||||| | | | || ||||||||||||||||||| |||||| |
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| T |
5496054 |
cctaaagaatgaggcaatttcccagttagttggttataactcaaatccaacaacatcaaactttggttgctacaagacatggcctc |
5495969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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