View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11794_high_6 (Length: 559)
Name: NF11794_high_6
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 32 - 427
Target Start/End: Original strand, 3427991 - 3428386
Alignment:
| Q |
32 |
atcaagccgcacgcgtatatctccttgattatttacttattgggttacacaattttcttattactcaagctttagtggtacaaatttataagctggaaat |
131 |
Q |
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| T |
3427991 |
atcatgccgcacacatatatccccttaattatttacttattggattacacaattttcttattactcaagttttagtggtacaaatttataagctggaaat |
3428090 |
T |
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| Q |
132 |
attctatcattttctcatatataatttaagaatctcatgtgtagtgtaaatgtgcctgtagtgtgtaagaatcaattttgaattgatgttaattatcgtt |
231 |
Q |
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| T |
3428091 |
attctatcattttctcatatataatttaagaatctcatgtgtagtgtaaatgtgcccgtagtgtgtaagaatcaattttgaattgatgttaattatcgtt |
3428190 |
T |
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| Q |
232 |
aagttgcacaaatgggttatgagagaagaagagtgcaaacgtttgaaatgtctctctccatctcaaggagacaagatgatgtcatgagacaattgaattg |
331 |
Q |
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| T |
3428191 |
aagttgcacaaatgggttatgagagaagaagagtgcaaacgtttgaaatgtctctctccatctcaaggagacaagatgatgtcatgagacaattgaattg |
3428290 |
T |
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| Q |
332 |
tcaagagtggggatcacaaaataaaagaataaaagttgatttataacaacaattctttgagaatttaatgcacaaacatgaacgagctaatgtcaa |
427 |
Q |
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| T |
3428291 |
tcaagagtggggatcacaaaataaaagaataaaagttgatttataacaataattctttgagaatttaatgcacaaacatgaacgagctaatgtcaa |
3428386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 424 - 555
Target Start/End: Original strand, 3428449 - 3428580
Alignment:
| Q |
424 |
tcaatttagtttataaattgtcattctttatctaattttgcctataaattaattatcaattttgtcaaacagtctaatagttaaaatcaaacacgtgaaa |
523 |
Q |
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| T |
3428449 |
tcaatttagtttataaattgtcattttttatctaattttgcctataaattaattatcaattttgtctaacaatctagtagttaaaatcaaacacgtaaaa |
3428548 |
T |
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| Q |
524 |
tcttgagaagtggagaatctcatattcagacc |
555 |
Q |
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| T |
3428549 |
tcttgagaagcggagaatctcatattcagacc |
3428580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 293 - 428
Target Start/End: Original strand, 3431035 - 3431170
Alignment:
| Q |
293 |
ctcaaggagacaagatgatgtcatgagacaattgaattgtcaagagtggggatcacaaaataaaagaataaaagttgatttataacaacaattctttgag |
392 |
Q |
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| T |
3431035 |
ctcaacgagacaagatgatgtaatgagacaatcgcattgtcaagagtggggatcacaaaataaaagaataaaagttgatttataataataattctttgag |
3431134 |
T |
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| Q |
393 |
aatttaatgcacaaacatgaacgagctaatgtcaat |
428 |
Q |
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| T |
3431135 |
aatataatgcactagcatgaatgaggtaatgtcaat |
3431170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 57 - 185
Target Start/End: Original strand, 3430829 - 3430959
Alignment:
| Q |
57 |
tgattatttacttattgggttacacaattttcttattactcaagctttagtggtacaaatttataagctggaaatattctatcattttctcatatataat |
156 |
Q |
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| T |
3430829 |
tgattatttactcattgaattacacaattttttcattactcaagttttagtggtaagaattcatgagttggaaatattctattgtttcttcatatataat |
3430928 |
T |
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| Q |
157 |
ttaagaatctcatgt--gtagtgtaaatgtg |
185 |
Q |
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| T |
3430929 |
ttaagaatctcatgtcagtagtgtaaatgtg |
3430959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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