View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11794_high_8 (Length: 505)

Name: NF11794_high_8
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11794_high_8
NF11794_high_8
[»] chr4 (12 HSPs)
chr4 (216-499)||(52189186-52189469)
chr4 (216-343)||(52190303-52190430)
chr4 (216-343)||(30829927-30830054)
chr4 (227-343)||(31409324-31409437)
chr4 (216-358)||(31410531-31410671)
chr4 (357-473)||(31410362-31410481)
chr4 (219-341)||(8480884-8481006)
chr4 (217-341)||(8479652-8479777)
chr4 (216-341)||(41774644-41774769)
chr4 (216-277)||(41780253-41780314)
chr4 (288-342)||(53226752-53226806)
chr4 (220-320)||(23545306-23545406)
[»] chr8 (9 HSPs)
chr8 (215-499)||(17863465-17863748)
chr8 (217-339)||(3872224-3872346)
chr8 (216-343)||(17864649-17864776)
chr8 (216-344)||(32565567-32565695)
chr8 (216-339)||(3870768-3870891)
chr8 (216-277)||(5005708-5005769)
chr8 (216-277)||(12887725-12887786)
chr8 (216-301)||(37241028-37241113)
chr8 (215-277)||(5014824-5014886)
[»] chr1 (10 HSPs)
chr1 (216-473)||(35062564-35062833)
chr1 (216-344)||(26529508-26529636)
chr1 (216-344)||(36573962-36574090)
chr1 (216-343)||(35063556-35063683)
chr1 (216-344)||(49917389-49917516)
chr1 (215-340)||(26531027-26531152)
chr1 (216-320)||(36575494-36575598)
chr1 (212-302)||(49919676-49919766)
chr1 (400-473)||(26280890-26280963)
chr1 (216-277)||(26530502-26530563)
[»] chr5 (5 HSPs)
chr5 (219-473)||(35967351-35967617)
chr5 (212-344)||(16727808-16727940)
chr5 (215-343)||(38921454-38921582)
chr5 (251-343)||(35968630-35968722)
chr5 (268-343)||(16306747-16306822)
[»] chr7 (11 HSPs)
chr7 (221-473)||(41740820-41741084)
chr7 (12-144)||(1553372-1553496)
chr7 (216-343)||(41739622-41739749)
chr7 (12-173)||(1537392-1537558)
chr7 (216-320)||(45291910-45292014)
chr7 (216-320)||(38516620-38516724)
chr7 (216-320)||(45296035-45296139)
chr7 (218-356)||(42537718-42537855)
chr7 (217-341)||(40601756-40601882)
chr7 (289-342)||(25272077-25272130)
chr7 (216-341)||(40600711-40600838)
[»] chr2 (9 HSPs)
chr2 (216-344)||(36669088-36669216)
chr2 (216-344)||(31622038-31622166)
chr2 (216-343)||(4753528-4753655)
chr2 (213-341)||(40894807-40894935)
chr2 (216-320)||(31620525-31620629)
chr2 (215-341)||(35298555-35298681)
chr2 (219-277)||(4755036-4755094)
chr2 (216-341)||(35306045-35306170)
chr2 (216-320)||(36666201-36666306)
[»] chr3 (12 HSPs)
chr3 (357-473)||(19810518-19810638)
chr3 (212-342)||(9099556-9099686)
chr3 (216-340)||(20997633-20997757)
chr3 (214-343)||(36163381-36163510)
chr3 (214-342)||(19801784-19801910)
chr3 (216-356)||(37464910-37465049)
chr3 (216-339)||(11137912-11138035)
chr3 (217-343)||(37463680-37463806)
chr3 (288-344)||(20884298-20884354)
chr3 (216-343)||(36164510-36164637)
chr3 (215-341)||(18912547-18912673)
chr3 (216-270)||(18939861-18939915)
[»] chr6 (8 HSPs)
chr6 (215-343)||(18191745-18191873)
chr6 (216-320)||(9448723-9448827)
chr6 (288-343)||(30758806-30758861)
chr6 (212-339)||(31855647-31855774)
chr6 (289-343)||(21396367-21396421)
chr6 (216-343)||(11020322-11020449)
chr6 (216-343)||(18192939-18193066)
chr6 (216-273)||(226121-226178)
[»] scaffold0115 (4 HSPs)
scaffold0115 (216-339)||(4336-4459)
scaffold0115 (216-339)||(12076-12199)
scaffold0115 (216-302)||(6055-6141)
scaffold0115 (216-302)||(13795-13881)


Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 216 - 499
Target Start/End: Original strand, 52189186 - 52189469
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||    
T  52189186 gagtaaaccctcatttgggtccctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaatcaaaaactcgctcaatgtatgttccgtt 52189285  T
Q  316 agtcaaatgcatccaaaacgttaacttgaacgttaagtgtgattggagagggacctgaatgaatgtaatccctccatcttctggaaaaaattaacaagtt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  52189286 agtcaaatgcatccaaaacgttaacttgaacgttaagtgtgattggagagggacctgaatgaatgtaatccctccatcttctgaaaaaaattaacaagtt 52189385  T
Q  416 catatcttcatcttccttcataccctccatctcaaaacattccaaaagacaaaaataagttatttaaaatcattatctctgctc 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  52189386 catatcttcatcttccttcataccctccatctcaaaacattccaaaagacaaaaataagttctttacaatcattatctctgctc 52189469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 216 - 343
Target Start/End: Complemental strand, 52190430 - 52190303
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||| |||||||| ||||||||||| |||||||||||||| |||| |||||||||||||| ||||||||||||||||||||| ||||  |||    
T  52190430 gagtaaaccctcatttgggtccctgaaagtgcatctcgctatcagccagatccatggatcaattaaacgaaccaaaaactcccccaatgtctgttttgtt 52190331  T
Q  316 agtcaaatgcatccaaaacgttaacttg 343  Q
    ||||||||||||||||||||||||||||    
T  52190330 agtcaaatgcatccaaaacgttaacttg 52190303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 216 - 343
Target Start/End: Original strand, 30829927 - 30830054
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||| |||||||| |||||||||   ||||||||||| ||||||||| ||||||| |||| ||||||||||||||||||||  |||| ||||    
T  30829927 gagtaaaccctcatttgggtccctgaaagtgttgctcgctatcaggcacatccctagatcaatgaaacgaaccaaaaactcccccaatgattgtttcgtt 30830026  T
Q  316 agtcaaatgcatccaaaacgttaacttg 343  Q
    ||||||||||||||||||||||||||||    
T  30830027 agtcaaatgcatccaaaacgttaacttg 30830054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 227 - 343
Target Start/End: Original strand, 31409324 - 31409437
Alignment:
Q  227 cgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgca 326  Q
    |||||||||| |||||||||||||||||||||| |||| ||| |||||||| ||||| |||||||||||||| ||   | ||||||||||||||||||||    
T  31409324 cgtttgggtccctgaaagtgcacctcgctatcaaccacgtccttggatcaaataaacgaaccaaaaactccctca---tctgttccgttagtcaaatgca 31409420  T
Q  327 tccaaaacgttaacttg 343  Q
    |||||||||||||||||    
T  31409421 tccaaaacgttaacttg 31409437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 358
Target Start/End: Complemental strand, 31410671 - 31410531
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||  ||| |||  ||||||||||||||||||||||| ||| | |||| ||||||||||| || |||||||| || |||| | |||||||||    
T  31410671 gagtaaacccttatttaggttcctgaaagtgcacctcgctatcagacacgttcctgaatcaattaaacgaatcaaaaact-cctcaatatctgttccgtt 31410573  T
Q  316 agtcaaatgcatccaaaacgttaacttgaacgttaagtgtgat 358  Q
    ||||| |  | |||||||||||||| |||||||||||||||||    
T  31410572 agtcacacacgtccaaaacgttaac-tgaacgttaagtgtgat 31410531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 357 - 473
Target Start/End: Complemental strand, 31410481 - 31410362
Alignment:
Q  357 attggagagggacctgaatgaatgtaat---ccctccatcttctggaaaaaattaacaagttcatatcttcatcttccttcataccctccatctcaaaac 453  Q
    |||||||||||||  ||||||| |||||   || ||||||||||| | ||||||  |||| ||||| |||||||||| |||||||||||| |||||||||    
T  31410481 attggagagggacgagaatgaacgtaatatcccttccatcttctgtagaaaatttgcaagctcataacttcatcttctttcataccctccctctcaaaac 31410382  T
Q  454 attccaaaagacaaaaataa 473  Q
    ||||||| ||||||||||||    
T  31410381 attccaagagacaaaaataa 31410362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 219 - 341
Target Start/End: Complemental strand, 8481006 - 8480884
Alignment:
Q  219 taaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagt 318  Q
    ||||| ||| |||| ||| ||||||||| | ||||||||||| ||| ||||||||||||| ||||  ||||||||||||||||| || | ||||||||||    
T  8481006 taaactctcatttgagtccctgaaagtgtatctcgctatcagtcacgtccctggatcaatgaaacgcaccaaaaactcccccaaagtctcttccgttagt 8480907  T
Q  319 caaatgcatccaaaacgttaact 341  Q
    ||    |||||||||||||||||    
T  8480906 cattcccatccaaaacgttaact 8480884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 341
Target Start/End: Original strand, 8479652 - 8479777
Alignment:
Q  217 agtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaa-ctcccccaatgtatgttccgtt 315  Q
    |||||| |||| |||||||| ||||||||| | || |||||||||||| | |||||||||||  |||  |||||||| ||||||||| || | |||||||    
T  8479652 agtaaatcctcatttgggtccctgaaagtgtatcttgctatcagccacgttcctggatcaatacaacgcaccaaaaacctcccccaaagtctcttccgtt 8479751  T
Q  316 agtcaaatgcatccaaaacgttaact 341  Q
    |||||  | ||||||||| |||||||    
T  8479752 agtcatttccatccaaaatgttaact 8479777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 341
Target Start/End: Original strand, 41774644 - 41774769
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||| ||| |||||||| ||||||||| |||||||||||| |||| |||||| |||||  ||||  |  ||||||||||| || || | |||||||    
T  41774644 gagtaaactctcatttgggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgcaaaaaaaactccccgaaagtgtcttccgtt 41774743  T
Q  316 agtcaaatgcatccaaaacgttaact 341  Q
    |||||     ||||||||||||||||    
T  41774744 agtcattccgatccaaaacgttaact 41774769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 41780314 - 41780253
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaa 277  Q
    |||||||||||| |||||||||||||||||| |||||||||||| |||| | |||| |||||    
T  41780314 gagtaaaccctcatttgggtctctgaaagtgtacctcgctatcaaccacgttcctgaatcaa 41780253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 342
Target Start/End: Original strand, 53226752 - 53226806
Alignment:
Q  288 caaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaactt 342  Q
    |||||||||| |||||||||||||   ||||||||||||||  ||||||||||||    
T  53226752 caaaaactcctccaatgtatgttctaatagtcaaatgcatctgaaacgttaactt 53226806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 320
Target Start/End: Complemental strand, 23545406 - 23545306
Alignment:
Q  220 aaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtc 319  Q
    |||||||| |||| |||  |||||||| |||| |||||||| ||| || ||| |||||  |||| |||||||||||||  |||||| |||| | ||||||    
T  23545406 aaaccctcatttgagtccttgaaagtgtaccttgctatcagacacgtctctgaatcaagaaaacgaaccaaaaactccttcaatgtctgtttcattagtc 23545307  T
Q  320 a 320  Q
    |    
T  23545306 a 23545306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 233; Significance: 1e-128; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 215 - 499
Target Start/End: Original strand, 17863465 - 17863748
Alignment:
Q  215 tgagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgt 314  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||    
T  17863465 tgagtaaaccctcatttgggtccctgaaagtgcacctcgctatcagccacatccttggatcaattaaataaaccaaaaactcctccaatgtatgttccgt 17863564  T
Q  315 tagtcaaatgcatccaaaacgttaacttgaacgttaagtgtgattggagagggacctgaatgaatgtaatccctccatcttctggaaaaaattaacaagt 414  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17863565 cagtcaaatgcatccaaaacgttaact-gaacgttaagtgtgattggagagggacctgaatgaatgtaatccctccatcttctagaaaaaattaacaagt 17863663  T
Q  415 tcatatcttcatcttccttcataccctccatctcaaaacattccaaaagacaaaaataagttatttaaaatcattatctctgctc 499  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  17863664 tcatatttttatcttccttcataccctccatctcaaaacattccaaaagacaaaaataagttctttacaatcattatctctgctc 17863748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 217 - 339
Target Start/End: Complemental strand, 3872346 - 3872224
Alignment:
Q  217 agtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtta 316  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||| | |||||  | ||||||||    
T  3872346 agtaaaccctcgtttgggtccctgaaagtgcacctcgctatcagccacgtccctgtatcaattaaacgaaccaaaaactctctcaatggttattccgtta 3872247  T
Q  317 gtcaaatgcatccaaaacgttaa 339  Q
    ||||| | | |||||||||||||    
T  3872246 gtcaatttcgtccaaaacgttaa 3872224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 216 - 343
Target Start/End: Complemental strand, 17864776 - 17864649
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||| ||||| ||  |||||||||| |||||||||||||||||||| ||||||| ||||| |||||| ||||||| |||||| | ||  |||    
T  17864776 gagtaaaccctcatttggttccttgaaagtgcatctcgctatcagccacatccccggatcaaataaacgaaccaagaactccctcaatgtctattttgtt 17864677  T
Q  316 agtcaaatgcatccaaaacgttaacttg 343  Q
    ||||||||||||||||||| ||||||||    
T  17864676 agtcaaatgcatccaaaacattaacttg 17864649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 216 - 344
Target Start/End: Complemental strand, 32565695 - 32565567
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||||||| |||| |||||||||  |||||||||||| |   ||||| |||||||| ||  || ||||||||||||||||||| |||  |||    
T  32565695 gagtaaaccctcgtttaggtccctgaaagtgtccctcgctatcagaccagtccctcgatcaatttaatgaatcaaaaactcccccaatgtacgttatgtt 32565596  T
Q  316 agtcaaatgcatccaaaacgttaacttga 344  Q
    |||||||||||||||||||||||||||||    
T  32565595 agtcaaatgcatccaaaacgttaacttga 32565567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 216 - 339
Target Start/End: Original strand, 3870768 - 3870891
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    ||||||||||||  ||||||| |||||| ||||  |||||||||||||| ||||| |||||||||| | || ||||||||||||||||   |||||||||    
T  3870768 gagtaaaccctcacttgggtccctgaaaatgcatttcgctatcagccacgtccctagatcaattaagcgaatcaaaaactcccccaatagttgttccgtt 3870867  T
Q  316 agtcaaatgcatccaaaacgttaa 339  Q
    |||||| | | |||||||||||||    
T  3870868 agtcaatttcgtccaaaacgttaa 3870891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 5005708 - 5005769
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaa 277  Q
    |||||||||||| |||||||| ||||||||| |||||||||||| |||| |||||| |||||    
T  5005708 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaa 5005769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 12887786 - 12887725
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaa 277  Q
    |||||||||||| |||||||| ||||||||| ||||||| ||||| || |||||||||||||    
T  12887786 gagtaaaccctcatttgggtccctgaaagtgtacctcgcgatcagacatatccctggatcaa 12887725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 37241028 - 37241113
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactccccca 301  Q
    ||||||| ||||||||||||  ||||||||| | ||||||||||| ||| | | ||||||||| ||||  ||||||||||||||||    
T  37241028 gagtaaatcctcgtttgggttcctgaaagtgtatctcgctatcagtcacgttcttggatcaatgaaacgcaccaaaaactccccca 37241113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 277
Target Start/End: Complemental strand, 5014886 - 5014824
Alignment:
Q  215 tgagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaa 277  Q
    ||||||||||||| |||||||| ||||||||| |||||||||||| |||| ||| || |||||    
T  5014886 tgagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaaccacgtccttgaatcaa 5014824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 216 - 473
Target Start/End: Original strand, 35062564 - 35062833
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    ||||||||| || |||||||  || ||||| ||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||    
T  35062564 gagtaaaccttcatttgggttcctaaaagttcacctcgttatcaaccacatccctgaatcaattaaactaaccaaaaactcccccaatgtttgttccgtt 35062663  T
Q  316 agtcaaatgcatccaaaacgttaacttgaacgttaagtgtgat-----------tggagagggacctgaatgaatgtaat--ccctccatcttctggaaa 402  Q
    |||||    | |||||||| |||| ||||||||||||||||||           ||||||||||| ||||||||||||||  ||||| || |||||||||    
T  35062664 agtcatccacgtccaaaacattaa-ttgaacgttaagtgtgatgatgtgttcattggagagggacgtgaatgaatgtaatatccctcaattttctggaaa 35062762  T
Q  403 aaattaacaagttcatatcttcatcttccttcataccctccatctcaaaacattccaaaagacaaaaataa 473  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  35062763 aaattaacaagttcatatattcatcttcctcaataccctccatctcaaaacattccaaaagacaaaaataa 35062833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 216 - 344
Target Start/End: Original strand, 26529508 - 26529636
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||| |||||||| ||||||||| ||||||||||||| ||| |||||| |||||  |||| ||| |||||||||| |||||| ||||| |||    
T  26529508 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtttgttctgtt 26529607  T
Q  316 agtcaaatgcatccaaaacgttaacttga 344  Q
    |||||||||||||||||||||||||||||    
T  26529608 agtcaaatgcatccaaaacgttaacttga 26529636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 216 - 344
Target Start/End: Original strand, 36573962 - 36574090
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||| ||| ||| |||| ||||||||| |||||||||||| |||| |||||| |||||  |||| ||| |||||||||| |||||| |||||||||    
T  36573962 gagtaaacactcatttaggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttccgtt 36574061  T
Q  316 agtcaaatgcatccaaaacgttaacttga 344  Q
    |||||||||||||||||||||||||||||    
T  36574062 agtcaaatgcatccaaaacgttaacttga 36574090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 216 - 343
Target Start/End: Complemental strand, 35063683 - 35063556
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||| ||||||||||||||||||   ||| ||||||| |||||| || ||||||| |||| |||||||||||||||||||   |||| ||||    
T  35063683 gagtaaaccctcatttgggtctctgaaagtgttgctcactatcaggcacatctctagatcaatgaaacgaaccaaaaactcccccaattattgtttcgtt 35063584  T
Q  316 agtcaaatgcatccaaaacgttaacttg 343  Q
    ||||||||||||||||||||||||||||    
T  35063583 agtcaaatgcatccaaaacgttaacttg 35063556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 216 - 344
Target Start/End: Original strand, 49917389 - 49917516
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||| ||| |||||||||||||||||  | |||||||| || ||||||| |||||||||| ||  ||| ||||||||||  | ||| || || |||    
T  49917389 gagtaaactctcatttgggtctctgaaagtatagctcgctat-agtcacatccttggatcaatttaatgaactaaaaactcccgtattgtttgatctgtt 49917487  T
Q  316 agtcaaatgcatccaaaacgttaacttga 344  Q
    |||||||||||||||||| ||||||||||    
T  49917488 agtcaaatgcatccaaaatgttaacttga 49917516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 215 - 340
Target Start/End: Complemental strand, 26531152 - 26531027
Alignment:
Q  215 tgagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgt 314  Q
    ||||||||||||| ||| |||| ||||||||| |||||||||| || ||| |||||| |||||  |||| |||||||||||||| |||||| | ||| |     
T  26531152 tgagtaaaccctcattttggtccctgaaagtgtacctcgctattagacacgtccctgaatcaagaaaacgaaccaaaaactccctcaatgtctcttctgc 26531053  T
Q  315 tagtcaaatgcatccaaaacgttaac 340  Q
    |||||| |  | ||||||||||||||    
T  26531052 tagtcatacacgtccaaaacgttaac 26531027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 320
Target Start/End: Complemental strand, 36575598 - 36575494
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||| |||| ||| ||||||||| ||||||||||||| ||| ||| |  |||||  |||| ||||||||||| || |||||| |||||||||    
T  36575598 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagacacgtccttaaatcaagaaaacgaaccaaaaacttcctcaatgtctgttccgtt 36575499  T
Q  316 agtca 320  Q
    |||||    
T  36575498 agtca 36575494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 302
Target Start/End: Complemental strand, 49919766 - 49919676
Alignment:
Q  212 ttttgagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaa 302  Q
    |||||||||||| ||| ||||||||  ||||||||  | |||||||||| ||| ||||||||||||| ||||  |||||||||||||||||    
T  49919766 ttttgagtaaactctcatttgggtccttgaaagtgtgcatcgctatcagtcacttccctggatcaatgaaacgcaccaaaaactcccccaa 49919676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 26280963 - 26280890
Alignment:
Q  400 aaaaaattaacaagttcatatcttcatcttccttcataccct-ccatctcaaaacattccaaaagacaaaaataa 473  Q
    |||||||||||||| |||||||||||| ||||| |||||||| ||  ||||||||||| ||| ||||||||||||    
T  26280963 aaaaaattaacaagctcatatcttcatattcctccataccctcccccctcaaaacatt-caagagacaaaaataa 26280890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 26530502 - 26530563
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaa 277  Q
    ||||||||| || |||||||| ||||||||| ||||||||||||  ||  ||||||||||||    
T  26530502 gagtaaaccttcatttgggtccctgaaagtgtacctcgctatcaaacatgtccctggatcaa 26530563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 219 - 473
Target Start/End: Original strand, 35967351 - 35967617
Alignment:
Q  219 taaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagt 318  Q
    ||||||||| ||||| || |||||||| ||| ||| ||||||||||||||  | ||||||||||| ||||||||||||||||||||| ||||||||||||    
T  35967351 taaaccctcatttggatccctgaaagttcacatcgttatcagccacatcctcgaatcaattaaactaaccaaaaactcccccaatgtttgttccgttagt 35967450  T
Q  319 caaatgcatccaaaacgttaacttgaacgttaagtgtgat-----------tggagagggacctgaatgaatgtaat--ccctccatcttctggaaaaaa 405  Q
    |||   | |||||||| |||||  |  | |||||||||||           |||||||||   ||||||||||||||  ||||| || ||| ||||||||    
T  35967451 caaccacgtccaaaacattaacgggccc-ttaagtgtgatgatgtgtcaattggagaggggtgtgaatgaatgtaatatccctcaattttcgggaaaaaa 35967549  T
Q  406 ttaacaagttcatatcttcatcttccttcataccctccatctcaaaacattccaaaagacaaaaataa 473  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35967550 ttaacaagttcatatattcatcttcattcataccctccatctcaaaacattccaaaagacaaaaataa 35967617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 212 - 344
Target Start/End: Original strand, 16727808 - 16727940
Alignment:
Q  212 ttttgagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttc 311  Q
    |||| ||||||||||| |||||||| ||||||||| ||||||||||||||||| | |||| |||||  |||| ||| ||||||| || |||||| |||||    
T  16727808 ttttaagtaaaccctcatttgggtcgctgaaagtgtacctcgctatcagccacgttcctgaatcaagaaaacgaactaaaaacttcctcaatgtctgttc 16727907  T
Q  312 cgttagtcaaatgcatccaaaacgttaacttga 344  Q
    ||||||||||||||||||||||| |||||||||    
T  16727908 cgttagtcaaatgcatccaaaacattaacttga 16727940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 215 - 343
Target Start/End: Original strand, 38921454 - 38921582
Alignment:
Q  215 tgagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgt 314  Q
    ||||||||||||| |||||||| |||||||||   ||| ||||||| ||||||||| ||||||| |||  ||||||||||||||||||||  |||| |||    
T  38921454 tgagtaaaccctcatttgggtccctgaaagtgttgctcactatcaggcacatccctagatcaatgaaatgaaccaaaaactcccccaatgattgtttcgt 38921553  T
Q  315 tagtcaaatgcatccaaaacgttaacttg 343  Q
    |||||||||||||||||||||||||||||    
T  38921554 tagtcaaatgcatccaaaacgttaacttg 38921582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 251 - 343
Target Start/End: Complemental strand, 35968722 - 35968630
Alignment:
Q  251 tcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 343  Q
    |||||||||| ||||| | | ||||||| |||| |||||||||||||||||||   ||||  |||||||||||||||||||||||||||||||    
T  35968722 tcgctatcaggcacattcatagatcaatgaaacgaaccaaaaactcccccaattattgttttgttagtcaaatgcatccaaaacgttaacttg 35968630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 268 - 343
Target Start/End: Complemental strand, 16306822 - 16306747
Alignment:
Q  268 cctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 343  Q
    |||||||||||| ||  || |||||||| ||  ||||||||||  |||||||||||||||| ||||||||||||||    
T  16306822 cctggatcaatttaatgaatcaaaaacttccttaatgtatgttatgttagtcaaatgcatctaaaacgttaacttg 16306747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 221 - 473
Target Start/End: Complemental strand, 41741084 - 41740820
Alignment:
Q  221 aaccctcgtttgggtctctgaaagtgcacctcgct--atcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagt 318  Q
    ||||||| |||||||| |||||||| ||||| |||  ||||||  | |||| ||||||||||||| ||||||||||||||||||| | ||||||||||||    
T  41741084 aaccctcatttgggtccctgaaagttcaccttgctctatcagctgcgtccccggatcaattaaactaaccaaaaactcccccaatatttgttccgttagt 41740985  T
Q  319 caaatgcatccaaaacgttaacttgaacgttaagtgtgat-----------tggagagggacctgaatgaatgtaat--ccctccatcttctggaaaaaa 405  Q
    ||    | ||||||||||||||| |  |||||||||||||           || |||||||  ||||||||||||||  ||||| || ||||||||||||    
T  41740984 catccacgtccaaaacgttaactggc-cgttaagtgtgatgatgtgtcaattgaagagggatgtgaatgaatgtaatatccctcaattttctggaaaaaa 41740886  T
Q  406 ttaacaagttcatatcttcatcttccttcataccctccatctcaaaacattccaaaagacaaaaataa 473  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  41740885 ttaacaagttcatatattcatcttccttcataccctccatctcaaaacattcc--aagacaaaaataa 41740820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 1553372 - 1553496
Alignment:
Q  12 attgagtaaaactagtttgtttcccaaattttaaaaatatcacacataaatggttagaattatgagtttcaccgacnnnnnnnnntaatgttgaaaaaat 111  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||    
T  1553372 attgagtaaaactagtttatttcccaaatttaaaaaatatcacacataaatggttagaattatgagtttcaccgacaa--------aatgttgaaaaaat 1553463  T
Q  112 atagggtaaactttatctatttttatgtaatta 144  Q
    ||| |||||||||||||||||||||||| ||||    
T  1553464 atacggtaaactttatctatttttatgttatta 1553496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 216 - 343
Target Start/End: Original strand, 41739622 - 41739749
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||| |||||||  ||||||||    ||||||||||| ||||||||| ||||||| |||| ||||||||||||||||||||  |||| ||||    
T  41739622 gagtaaaccctcatttgggttcctgaaagtattgctcgctatcaggcacatccctagatcaatgaaacgaaccaaaaactcccccaatgattgtttcgtt 41739721  T
Q  316 agtcaaatgcatccaaaacgttaacttg 343  Q
    ||||||||||||||||||||||||||||    
T  41739722 agtcaaatgcatccaaaacgttaacttg 41739749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 1537558 - 1537392
Alignment:
Q  12 attgagtaaaactagtttgtt----tcccaaattttaaaaatatcacacataaatggttagaattatgagtttcaccgacnnnnnnnnntaatgtt-gaa 106  Q
    |||||||||||||||||||||    ||||||||||||||||||||||||||||||  | ||||||||||||||||  |||         | |||||  ||    
T  1537558 attgagtaaaactagtttgttaatttcccaaattttaaaaatatcacacataaattatgagaattatgagtttcattgacaaaaagaattcatgttaaaa 1537459  T
Q  107 aaaatatagggtaaactttatctatttttatgtaattaactcttaaatgttgactcacatattactt 173  Q
    ||||| ||  |||||||| |||||||||||||||| |||||||||||||||||  |||||| |||||    
T  1537458 aaaatgtaaagtaaacttgatctatttttatgtaagtaactcttaaatgttgaaccacataatactt 1537392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 216 - 320
Target Start/End: Complemental strand, 45292014 - 45291910
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||| |||||||| ||||||||| ||||||||||||| |||||||||| |||||  || | |||||||||||||| ||| || | |||||||    
T  45292014 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaggcacatccctgaatcaaggaatcgaaccaaaaactccctcaaagtctcttccgtt 45291915  T
Q  316 agtca 320  Q
    |||||    
T  45291914 agtca 45291910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 216 - 320
Target Start/End: Original strand, 38516620 - 38516724
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||| |||||||| ||||||||| || |||||||||| ||||||||||||||||  || | |||||||||||||| ||| || | | |||||    
T  38516620 gagtaaaccctcatttgggtccctgaaagtgtacatcgctatcagacacatccctggatcaaggaatccaaccaaaaactccctcaaagtttctcccgtt 38516719  T
Q  316 agtca 320  Q
    |||||    
T  38516720 agtca 38516724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 216 - 320
Target Start/End: Complemental strand, 45296139 - 45296035
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||| |||||||| || |||||| ||||||||||||| ||||||| ||||||||  || | |||||||||||||| ||| || | |||||||    
T  45296139 gagtaaaccctcatttgggtccctaaaagtgtacctcgctatcaggcacatccatggatcaaggaatcgaaccaaaaactccctcaaagtctcttccgtt 45296040  T
Q  316 agtca 320  Q
    |||||    
T  45296039 agtca 45296035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 356
Target Start/End: Original strand, 42537718 - 42537855
Alignment:
Q  218 gtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttag 317  Q
    ||||||||||  ||||||| |||||||||   |||||||||||  ||||||||| |||||| |||| ||||||||||||||| ||||| | ||||||| |    
T  42537718 gtaaaccctcagttgggtccctgaaagtgttgctcgctatcaggtacatccctgaatcaatgaaacgaaccaaaaactccccgaatgtctcttccgtttg 42537817  T
Q  318 tcaaatgcatccaaaacgttaacttgaacgttaagtgtg 356  Q
    |||    | ||||||||||||| ||||||||||| ||||    
T  42537818 tcattcacgtccaaaacgttaa-ttgaacgttaattgtg 42537855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 341
Target Start/End: Complemental strand, 40601882 - 40601756
Alignment:
Q  217 agtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaa--caaaccaaaaactcccccaatgtatgttccgt 314  Q
    ||||||||||| |||||||| |||||||||  |||||||||||| ||||||||| || |||  |||  ||||  ||||||||| | || || | ||||||    
T  40601882 agtaaaccctcatttgggtccctgaaagtgtgcctcgctatcaggcacatccctagaacaaggaaacgcaaaaaaaaaactcctcgaaagtctcttccgt 40601783  T
Q  315 tagtcaaatgcatccaaaacgttaact 341  Q
    ||||||    |||||||||||||||||    
T  40601782 tagtcattcccatccaaaacgttaact 40601756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 342
Target Start/End: Complemental strand, 25272130 - 25272077
Alignment:
Q  289 aaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaactt 342  Q
    ||||| |||| ||||||||||   ||||||||||||||| ||||||||||||||    
T  25272130 aaaaattccctcaatgtatgtaaagttagtcaaatgcattcaaaacgttaactt 25272077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 341
Target Start/End: Original strand, 40600711 - 40600838
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaa--acaaaccaaaaactcccccaatgtatgttccg 313  Q
    |||||||||||| |||||||| |||||| ||  |||| ||||||| ||||||| |||| |||  ||  |||||  ||||||||||| || || | |||||    
T  40600711 gagtaaaccctcatttgggtccctgaaaatgtgcctctctatcaggcacatccttggaacaaggaaacacaaaaaaaaaactccccgaaagtctcttccg 40600810  T
Q  314 ttagtcaaatgcatccaaaacgttaact 341  Q
    |||||||    | |||||||||||||||    
T  40600811 ttagtcattcccgtccaaaacgttaact 40600838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 216 - 344
Target Start/End: Complemental strand, 36669216 - 36669088
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||  ||||| ||  |||||||||||||||||||||||||| |||||| |||||  |||||||| |||||||||| |||||| ||||| |||    
T  36669216 gagtaaaccctaatttggatccatgaaagtgcacctcgctatcagccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtctgttctgtt 36669117  T
Q  316 agtcaaatgcatccaaaacgttaacttga 344  Q
    |||||||||||||||||||||||||||||    
T  36669116 agtcaaatgcatccaaaacgttaacttga 36669088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 216 - 344
Target Start/End: Complemental strand, 31622166 - 31622038
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||  |||||||| ||||||||| |||||| ||||| |||| |||||| |||||  |||||||| |||||||||| |||||| |||||||||    
T  31622166 gagtaaacccttatttgggtccctgaaagtgtacctcgttatcaaccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtttgttccgtt 31622067  T
Q  316 agtcaaatgcatccaaaacgttaacttga 344  Q
     ||||||||||||||||||||||||||||    
T  31622066 tgtcaaatgcatccaaaacgttaacttga 31622038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 216 - 343
Target Start/End: Original strand, 4753528 - 4753655
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    ||||||||||||||||||||| |||||||||   ||||||||||| |   |||||||||||||||||  || ||||||||||| |||||||||||  |||    
T  4753528 gagtaaaccctcgtttgggtccctgaaagtgtctctcgctatcagaccagtccctggatcaattaaatgaatcaaaaactccctcaatgtatgttttgtt 4753627  T
Q  316 agtcaaatgcatccaaaacgttaacttg 343  Q
    ||||||||||||||||||||||||||||    
T  4753628 agtcaaatgcatccaaaacgttaacttg 4753655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 213 - 341
Target Start/End: Complemental strand, 40894935 - 40894807
Alignment:
Q  213 tttgagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttcc 312  Q
    ||||||||||||||| ||||| || || |||||| |||||||||||||  || ||||||||||||| |||| ||| ||||||||||||||||| | ||||    
T  40894935 tttgagtaaaccctcatttggatccctaaaagtgtacctcgctatcaggtacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttcc 40894836  T
Q  313 gttagtcaaatgcatccaaaacgttaact 341  Q
    ||||||||    | |||||||||||||||    
T  40894835 gttagtcattcacgtccaaaacgttaact 40894807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 320
Target Start/End: Original strand, 31620525 - 31620629
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||| |||| ||| ||||||||| |||||||||||||  || ||| || |||||  |||| |||||||||||| | |||||| |||||||||    
T  31620525 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagatacgtccttgaatcaagaaaacgaaccaaaaactcgctcaatgtctgttccgtt 31620624  T
Q  316 agtca 320  Q
    |||||    
T  31620625 agtca 31620629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 215 - 341
Target Start/End: Original strand, 35298555 - 35298681
Alignment:
Q  215 tgagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgt 314  Q
    ||||||||||||| |||||||  ||||||||| |||||||||||| |||| |||||| |||||  ||||  |  ||||||||||| || || | || |||    
T  35298555 tgagtaaaccctcatttgggttcctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgcaaaaaaaactccccgaaagtctctttcgt 35298654  T
Q  315 tagtcaaatgcatccaaaacgttaact 341  Q
    ||||||    |||||||||||||||||    
T  35298655 tagtcattcccatccaaaacgttaact 35298681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 4755094 - 4755036
Alignment:
Q  219 taaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaa 277  Q
    ||||||||| ||||||||||||||||||  |||||||||||| ||| ||||| ||||||    
T  4755094 taaaccctcatttgggtctctgaaagtgtccctcgctatcagacacgtccctagatcaa 4755036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 341
Target Start/End: Complemental strand, 35306170 - 35306045
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||| ||| |||| ||||||||| ||||||||||||  ||  |||||| |||||  |||| ||  ||||||||||| || || | ||| |||    
T  35306170 gagtaaaccctcatttaggtccctgaaagtgtacctcgctatcaaacatgtccctgaatcaagaaaacgaaaaaaaaactccccgaaagtctcttctgtt 35306071  T
Q  316 agtcaaatgcatccaaaacgttaact 341  Q
    |||||    |||||||||||||||||    
T  35306070 agtcattctcatccaaaacgttaact 35306045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 320
Target Start/End: Original strand, 36666201 - 36666306
Alignment:
Q  216 gagtaaaccctcgtttgggtctct-gaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgt 314  Q
    |||||||||||  |||||||| || ||||||| ||||||| || || |||||  ||| |||||  |||| ||| ||||||| || |||||| ||||||||    
T  36666201 gagtaaacccttatttgggtcacttgaaagtgtacctcgcaattagacacatttctgaatcaagaaaacgaactaaaaacttcctcaatgtctgttccgt 36666300  T
Q  315 tagtca 320  Q
    ||||||    
T  36666301 tagtca 36666306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 357 - 473
Target Start/End: Complemental strand, 19810638 - 19810518
Alignment:
Q  357 attggagagggacctgaatgaatgtaat---ccctccatcttctggaaaaaa-ttaacaagttcatatcttcatcttccttcataccctccatctcaaaa 452  Q
    ||||||||||||   |||||||||||||   || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  19810638 attggagagggataagaatgaatgtaatatcccttccatcttctggaaaaaaattaacaagttcatatcttcatcttccttcataccctccctctcaaaa 19810539  T
Q  453 cattccaaaagacaaaaataa 473  Q
    |||||||| ||||||||||||    
T  19810538 cattccaagagacaaaaataa 19810518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 212 - 342
Target Start/End: Original strand, 9099556 - 9099686
Alignment:
Q  212 ttttgagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttc 311  Q
    |||||||||||||||| |||||||| || |||||| ||||||||||||  |||||||||| |||||| |||| ||||||||||||   ||||||  ||||    
T  9099556 ttttgagtaaaccctcatttgggtcccttaaagtgtacctcgctatcaagcacatccctgaatcaatgaaacgaaccaaaaactctttcaatgttggttc 9099655  T
Q  312 cgttagtcaaatgcatccaaaacgttaactt 342  Q
    ||||||||||||   ||||||||||||||||    
T  9099656 cgttagtcaaataagtccaaaacgttaactt 9099686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 216 - 340
Target Start/End: Original strand, 20997633 - 20997757
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||| |||||||| |||||| || ||||||||||||  |||||||| |||||||| ||||||||||||||||||  ||||||  ||| ||||    
T  20997633 gagtaaaccctcatttgggtccctgaaaatgtacctcgctatcaagcacatcccaggatcaataaaacaaaccaaaaactccttcaatgttggtttcgtt 20997732  T
Q  316 agtcaaatgcatccaaaacgttaac 340  Q
    ||||||||   ||||||||||||||    
T  20997733 agtcaaataagtccaaaacgttaac 20997757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 214 - 343
Target Start/End: Original strand, 36163381 - 36163510
Alignment:
Q  214 ttgagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccg 313  Q
    ||||||||||| || ||||| || |||||||||  |||||||||||| |  ||||||  ||||||| ||  || ||||||||||||||||||| |||  |    
T  36163381 ttgagtaaaccttcatttggatccctgaaagtgtccctcgctatcagaccaatccctcaatcaatttaatgaatcaaaaactcccccaatgtacgttatg 36163480  T
Q  314 ttagtcaaatgcatccaaaacgttaacttg 343  Q
    ||||||||||||||||||||||||||||||    
T  36163481 ttagtcaaatgcatccaaaacgttaacttg 36163510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 342
Target Start/End: Original strand, 19801784 - 19801910
Alignment:
Q  214 ttgagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccg 313  Q
    |||||||||||||| ||  |||| ||||||||| |||||||||||||| || ||| | |||||||||||| |||||||||||||||||   | || |  |    
T  19801784 ttgagtaaaccctcattccggtccctgaaagtgtacctcgctatcagctacgtccttagatcaattaaacgaaccaaaaactccccca--ttttgatttg 19801881  T
Q  314 ttagtcaaatgcatccaaaacgttaactt 342  Q
    ||||||||||  |||||||||||||||||    
T  19801882 ttagtcaaatttatccaaaacgttaactt 19801910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 216 - 356
Target Start/End: Complemental strand, 37465049 - 37464910
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||  |||||||| |||||||||   |||||||||||  |||||||| ||||||| |||||||||||||||||||  ||||| | |||||||    
T  37465049 gagtaaaccctaatttgggtccctgaaagtgttgctcgctatcaggtacatccctagatcaatgaaacaaaccaaaaactccctgaatgtctcttccgtt 37464950  T
Q  316 agtcaaatgcatccaaaacgttaacttgaacgttaagtgtg 356  Q
     ||||    | |||||||||||||| |||||||||| ||||    
T  37464949 tgtcattcacgtccaaaacgttaac-tgaacgttaattgtg 37464910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 216 - 339
Target Start/End: Original strand, 11137912 - 11138035
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||| ||||| ||||| ||| || ||||||||||||| |||||||||||||||   |||| |||||||||||||| |||||| |||| | ||    
T  11137912 gagtaaaccctcatttggttctctaaaaatgtacctcgctatcagacacatccctggatcatgaaaacgaaccaaaaactccctcaatgtctgtttcttt 11138011  T
Q  316 agtcaaatgcatccaaaacgttaa 339  Q
    ||| | |  | |||||||||||||    
T  11138012 agttatacacgtccaaaacgttaa 11138035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 217 - 343
Target Start/End: Original strand, 37463680 - 37463806
Alignment:
Q  217 agtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtta 316  Q
    |||||||||||| ||||||  |||||||||   ||||||||||  ||| ||||||||||||| |||| | ||||||||||  | ||||| | |||| |||    
T  37463680 agtaaaccctcgcttgggttcctgaaagtgtttctcgctatcaagcacgtccctggatcaatgaaacgatccaaaaactcatctaatgtctcttccatta 37463779  T
Q  317 gtcaaatgcatccaaaacgttaacttg 343  Q
    ||||  | | |||||||||||||||||    
T  37463780 gtcatttacgtccaaaacgttaacttg 37463806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 20884298 - 20884354
Alignment:
Q  288 caaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttga 344  Q
    |||||||||| |||||  ||||||  |||||||||||||||||||||||||||||||    
T  20884298 caaaaactcctccaatacatgttctcttagtcaaatgcatccaaaacgttaacttga 20884354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 343
Target Start/End: Complemental strand, 36164637 - 36164510
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||| |||||||| |||||||||  |||||||||||| |   ||||| ||||||   ||   |  |||||||| | ||||||  ||||||||    
T  36164637 gagtaaaccctcatttgggtccctgaaagtgtccctcgctatcagaccagtccctcgatcaacagaaattattaaaaactctctcaatgttagttccgtt 36164538  T
Q  316 agtcaaatgcatccaaaacgttaacttg 343  Q
    |||||| |  ||||||||||||||||||    
T  36164537 agtcaatttaatccaaaacgttaacttg 36164510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 341
Target Start/End: Original strand, 18912547 - 18912673
Alignment:
Q  215 tgagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgt 314  Q
    ||||||||||||| |||||||| ||||||||| ||||| |||| | |||  |||||| |||||  ||||  |  ||||||||||  || || | ||||||    
T  18912547 tgagtaaaccctcatttgggtccctgaaagtgtacctcactattaaccatgtccctgaatcaagaaaacgcaaaaaaaactccctgaaagtctcttccgt 18912646  T
Q  315 tagtcaaatgcatccaaaacgttaact 341  Q
    ||||||    |||||||||||||||||    
T  18912647 tagtcattcccatccaaaacgttaact 18912673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 18939915 - 18939861
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccct 270  Q
    |||||||||||| |||||||| ||||||||| || ||||||||| |||| |||||    
T  18939915 gagtaaaccctcatttgggtccctgaaagtgtacttcgctatcaaccacgtccct 18939861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 215 - 343
Target Start/End: Original strand, 18191745 - 18191873
Alignment:
Q  215 tgagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgt 314  Q
    ||||||||||||| |||||||| |||||||||  || ||||||||| |   |||||  ||||||| ||  || |||||||||||||||||||||||  ||    
T  18191745 tgagtaaaccctcatttgggtccctgaaagtgtcccacgctatcagaccagtccctcaatcaatttaatgaatcaaaaactcccccaatgtatgttatgt 18191844  T
Q  315 tagtcaaatgcatccaaaacgttaacttg 343  Q
    |||||||||||||||||||||||||||||    
T  18191845 tagtcaaatgcatccaaaacgttaacttg 18191873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 216 - 320
Target Start/End: Complemental strand, 9448827 - 9448723
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||| |||||||| ||||||||| ||||||||||||| ||||||||||||||||  || | |||||||||||||| ||| || | |||| ||    
T  9448827 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacatccctggatcaaggaatcgaaccaaaaactccctcaaagtctcttccttt 9448728  T
Q  316 agtca 320  Q
    |||||    
T  9448727 agtca 9448723  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 343
Target Start/End: Complemental strand, 30758861 - 30758806
Alignment:
Q  288 caaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 343  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||| ||||||||    
T  30758861 caaaaactccctcaatgtatgttttgttagtcaaatgcatccaaaacattaacttg 30758806  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 339
Target Start/End: Original strand, 31855647 - 31855774
Alignment:
Q  212 ttttgagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttc 311  Q
    |||||||||||| ||| ||||  ||| ||||||||   ||||||||||| |   | |||| ||||||| ||  || |||||||||||| ||||||||||     
T  31855647 ttttgagtaaactctcatttgaatctttgaaagtgtctctcgctatcagaccagttcctgaatcaatttaatgaatcaaaaactcccctaatgtatgtta 31855746  T
Q  312 cgttagtcaaatgcatccaaaacgttaa 339  Q
     |||||||||||| ||||||||| ||||    
T  31855747 tgttagtcaaatgtatccaaaacattaa 31855774  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 343
Target Start/End: Original strand, 21396367 - 21396421
Alignment:
Q  289 aaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 343  Q
    ||||||||| |||||||||||||  |||||||||| ||||||||||| |||||||    
T  21396367 aaaaactcctccaatgtatgttcttttagtcaaatacatccaaaacgctaacttg 21396421  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 343
Target Start/End: Complemental strand, 11020449 - 11020322
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||| |||||||| |||||||||  |||||||||||| |  |||||| ||||||   ||   |  |||||||||| ||||||  ||||| ||    
T  11020449 gagtaaaccctcatttgggtccctgaaagtgtccctcgctatcagaccaatccctcgatcaacagaaattattaaaaactccctcaatgttagttccatt 11020350  T
Q  316 agtcaaatgcatccaaaacgttaacttg 343  Q
    |||||| |  |||||||| |||||||||    
T  11020349 agtcaatttaatccaaaatgttaacttg 11020322  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 343
Target Start/End: Complemental strand, 18193066 - 18192939
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||| |||||||| |||||||||  |||||||||||| |   ||||| ||||||   ||   |  |||||||||| ||||||  |||| |||    
T  18193066 gagtaaaccctcatttgggtccctgaaagtgtccctcgctatcaggccagtccctcgatcaacataaattattaaaaactccctcaatgttagttctgtt 18192967  T
Q  316 agtcaaatgcatccaaaacgttaacttg 343  Q
    |||||| |  ||||||||||||||||||    
T  18192966 agtcaatttaatccaaaacgttaacttg 18192939  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 226121 - 226178
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctgga 273  Q
    |||||||||||| ||||||||  ||||||||  |||||||||||| ||||||| ||||    
T  226121 gagtaaaccctcatttgggtccttgaaagtgtgcctcgctatcaggcacatccatgga 226178  T

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Target: scaffold0115 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 216 - 339
Target Start/End: Original strand, 4336 - 4459
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||||||||| || || |||||| |  |||||||||||||| ||||| ||||||| ||||  ||||||||||||||||| || | |||| ||    
T  4336 gagtaaaccctcgtttggatccctaaaagtgtatatcgctatcagccacgtccctagatcaatgaaacgcaccaaaaactcccccaaagtctcttccatt 4435  T
Q  316 agtcaaatgcatccaaaacgttaa 339  Q
    |||||    |||||||||||||||    
T  4436 agtcattcccatccaaaacgttaa 4459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 216 - 339
Target Start/End: Original strand, 12076 - 12199
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgtt 315  Q
    |||||||||||||||||| || || |||||| |  |||||||||||||| ||||| ||||||| ||||  ||||||||||||||||| || | |||| ||    
T  12076 gagtaaaccctcgtttggatccctaaaagtgtatatcgctatcagccacgtccctagatcaatgaaacgcaccaaaaactcccccaaagtctcttccatt 12175  T
Q  316 agtcaaatgcatccaaaacgttaa 339  Q
    |||||    |||||||||||||||    
T  12176 agtcattcccatccaaaacgttaa 12199  T

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Target: scaffold0115; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 216 - 302
Target Start/End: Complemental strand, 6141 - 6055
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaa 302  Q
    |||||||||||| |||| ||| ||||||||| ||||||||||||||| | ||||| ||| ||| ||||  |||||||||||||||||    
T  6141 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagccccgtccctagattaatgaaacgcaccaaaaactcccccaa 6055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 216 - 302
Target Start/End: Complemental strand, 13881 - 13795
Alignment:
Q  216 gagtaaaccctcgtttgggtctctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaaccaaaaactcccccaa 302  Q
    |||||||||||| |||| ||| ||||||||| ||||||||||||||| | ||||| ||| ||| ||||  |||||||||||||||||    
T  13881 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagccccgtccctagattaatgaaacgcaccaaaaactcccccaa 13795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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