View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11794_low_1 (Length: 1286)
Name: NF11794_low_1
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_low_1 |
 | |
|
| [»] scaffold0305 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 1052; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 1052; E-Value: 0
Query Start/End: Original strand, 22 - 1243
Target Start/End: Complemental strand, 36527399 - 36526186
Alignment:
| Q |
22 |
cagtacaagcctcgatgctattcatccgtgatgtttcacatctgccccacaagcatttccacaaaagcatacattgaaaacaataatcaaaccagcccaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36527399 |
cagtacaagcctcgatgctattcatccgtgatgtttcacatctgccccacaagcatttccacaaaagcatacattgaaaacaataatcaaaccagcccaa |
36527300 |
T |
|
| Q |
122 |
actacctctacttattattgtccattcaaactgcactaaacatgatcatgctcaacattgatccttgctgacatggaaacc-gaaaaataatatgatgta |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36527299 |
actacctctacttattattgtccattcaaactgcactaaacatgatcatgctcaacattgatccttgctgacatggaaacccgaaaaataatatgatgta |
36527200 |
T |
|
| Q |
221 |
gtctcttataaaattggtttcagacagcaagttaattatgttagtgcaatttcactcttaaggaagattgtataacttgtactttgttgattatgaattg |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
36527199 |
gtctcttataaaattggtttcagacagcaagttaattctgttagtgcaattacactcttaagaaagagtgtataacttgtactttgttgattatgaattg |
36527100 |
T |
|
| Q |
321 |
agtggttcatacggtacaaaagataaaagtatttatagacatcatctcttacttgaataacaagtaagccaaccaactcataacaaactagttagttact |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36527099 |
agtggttcatacggtacaaaagataaaagtatttatagacatcatctcttacttgaataacaagtaagctaaccaactcataacaaactagttagttact |
36527000 |
T |
|
| Q |
421 |
aactaactctacctctaactactcgatagttgaattataaccacaaattccattttacttagtcaagtcatcgatcattttacaatataaacagaataac |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
36526999 |
aactaactctacctctaactactcgatagttgaattataaccacaaattccattttacttagtcaagccatcgatcattttacaatataaacagaataac |
36526900 |
T |
|
| Q |
521 |
accatacactcctcatcaatgccaagccaaggtctataccatccaattgtcccaagtcactaatatctgaac----------actatcttctcaaaagac |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36526899 |
accatacactcctcatcaatgccaagccaaggtctataccatccaattatcccaagtcactaatatctgaacgctatcttctactatcttctcaaaagac |
36526800 |
T |
|
| Q |
611 |
taataatttctaaaggggatagagatctccaaaaagatatgaaaataaatctcatattactaataatcatctacaattctcacaggagagaacaaggaga |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36526799 |
taataatttctaaaggggatagagatctccaaaaagatatgaaaataaatctcatattactaataatcatctacaattctcataggagagaacaaggaga |
36526700 |
T |
|
| Q |
711 |
ataccacaatagtggcgtggcggatcacagacaagagaattggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggat |
810 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36526699 |
ataccacaatagtgacgtggcggatcacagacaagagaagtggattagaccagtagctggggaagtgaagtgcaatgtcgacgcagcaatttttaaggat |
36526600 |
T |
|
| Q |
811 |
taaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaag |
910 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36526599 |
taaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaagcgaagacagcgtggtacaaaggtctcccacaacccaaagaag |
36526500 |
T |
|
| Q |
911 |
cagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttgattgcaagcaagtggttgacggcat |
1010 |
Q |
| |
|
||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36526499 |
cagaagctagaggtctaaaagaagcta-------------------gaggttttccagggtgtctatcgaacttgattgcaagcaagtggttgacggcat |
36526419 |
T |
|
| Q |
1011 |
ctctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattagg |
1110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36526418 |
ctctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattagg |
36526319 |
T |
|
| Q |
1111 |
agacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcccgagttcatgattatatgccatcttgtattacaactacta |
1210 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
36526318 |
agacaaacaaataatgttgcccacttgttagctcgggcgtcattatcttatgctagttcccgagttcatgattatatgtcatcttgtattacaactacca |
36526219 |
T |
|
| Q |
1211 |
ttagaaatgaaatgagttaagtttgtttctgtc |
1243 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
36526218 |
ttagaaatgaaatgagttaaatttgtttctgtc |
36526186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 694 - 1210
Target Start/End: Complemental strand, 37924071 - 37923557
Alignment:
| Q |
694 |
aggagagaacaaggagaataccacaatagtggcgtggcggatcacagacaagagaattggattagaccagtagctggggaagtgaagtgcaatgtcgatg |
793 |
Q |
| |
|
||||||||||| ||||||||||||||||||| || | |||||||||||| || | |||| || ||| |||| |||||||||||||||||||| |||| |
|
|
| T |
37924071 |
aggagagaacatggagaataccacaatagtgtaatgacagatcacagacaaaaggagtggactaaaccggtagtcggggaagtgaagtgcaatgttgatg |
37923972 |
T |
|
| Q |
794 |
cagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggtacaaaggtct |
893 |
Q |
| |
|
|| ||||||||||||| |||| ||||| | |||||||||||||||||||| |||||| ||||||||||||||||||||||| | | |||||||||||| |
|
|
| T |
37923971 |
caacaatttttaaggaacaaggttgtta--gagtcggtatgtgtctaagaggggatcgaggggagttcattaaagcaaagacaacatagtacaaaggtct |
37923874 |
T |
|
| Q |
894 |
cccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttgattgcaag |
993 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||| ||||||||||||||| |
|
|
| T |
37923873 |
cccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataaaatggcttggtaccttgaggtttccttcggtgtctatagaacttgattgcaag |
37923774 |
T |
|
| Q |
994 |
caagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaacttta |
1093 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||||||||||| ||||| ||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37923773 |
caagtggttgatggcatctcaagcaatctcagcaccaattccatgttcggcgcaattctgaatacttgcaaagtttcacttatgaatcatcaaaacttta |
37923674 |
T |
|
| Q |
1094 |
agataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcccgagttcatgattatatgccatc |
1193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
37923673 |
agataagtttcattaggagacaaacaaataatgttgcccacttgttagttagggcgtcattatcttatgctagttcccaagatcatgattatatgccatc |
37923574 |
T |
|
| Q |
1194 |
ttgtattacaactacta |
1210 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
37923573 |
ttgtattaaaactacta |
37923557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 785 - 1240
Target Start/End: Original strand, 37871803 - 37872260
Alignment:
| Q |
785 |
atgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggta |
884 |
Q |
| |
|
|||| ||||| |||| ||| ||||| ||| ||||||||||||| | |||||||| ||||| |||| | |||||| ||||| | |||| | | |||| |
|
|
| T |
37871803 |
atgttgatgcggcaaatttcaaggagcaagtatgttatggggtcagcatgtgtcttagaggggatcaaggggagtacattagggagaagaaatcttggtt |
37871902 |
T |
|
| Q |
885 |
caaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaactt |
984 |
Q |
| |
|
||||| |||||||||||||| | | |||||||||||| |||||||||||| ||| || ||||||| | |||||| | ||||| |||||| || |
|
|
| T |
37871903 |
taaaggcctcccacaacccaacaaggtggaagcaagaggtttaaaagaagcgacaatctgacttggtaaattaaggtttccttctgtgtccatcgaaatt |
37872002 |
T |
|
| Q |
985 |
gattgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatc |
1084 |
Q |
| |
|
||||| |||||||||||| ||| |||||||||||| ||| || |||||||||| | | | ||||| | | ||||||| |||||||| ||||| ||| |
|
|
| T |
37872003 |
gattgtaagcaagtggtttacgacatctctagcaatctcaacatcaattccatgctcgtggt-attctgattggttgcaaagcttcacttctgaataatc |
37872101 |
T |
|
| Q |
1085 |
aaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcccgagttc---atga |
1181 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||| || | | |||||||||| ||||||| ||||| |||| |
|
|
| T |
37872102 |
aaaactttaagataagttttattaggagacaaacaaataatgtttcccacttattagtcagagttgcgttatcttatggtagttccaaagttcatgatga |
37872201 |
T |
|
| Q |
1182 |
ttatatgccatcttgtattacaactactattagaaatgaaatgagttaagtttgtttct |
1240 |
Q |
| |
|
||||||||||||||||||||| || | ||| ||||||||||||| ||| ||||||| |
|
|
| T |
37872202 |
ttatatgccatcttgtattacgaccgttgttattaatgaaatgagttgagtatgtttct |
37872260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 364 - 459
Target Start/End: Original strand, 47565349 - 47565444
Alignment:
| Q |
364 |
atctcttacttgaataacaagtaagccaaccaactcataacaaactagttagttactaactaactctacctctaactactcgatagttgaattata |
459 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || ||| ||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| |
|
|
| T |
47565349 |
atctcttacttgaataacaagtaagcaaactaattcacaacaaactagttagttactaactaactctacttctaactacttggtagttgaattata |
47565444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 969 - 1200
Target Start/End: Complemental strand, 35051840 - 35051609
Alignment:
| Q |
969 |
ggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaact |
1068 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||| ||| |||| | ||| |||||||| || ||||| ||| ||| | ||| ||| |||||| |
|
|
| T |
35051840 |
ggtgtctatcaaacttgattacaagcaagtggttgacaacataactaggagactcaacaccaatttcaagtttgacgcaattattgatatttgaaaaact |
35051741 |
T |
|
| Q |
1069 |
tcacttatgaatc-atcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagt |
1167 |
Q |
| |
|
||| ||| ||| | | ||||||||||||| |||||||||||| |||||| ||||||| ||| ||| |||||| | | | ||||||||| |||||||||| |
|
|
| T |
35051740 |
tcagtta-gaacctaccaaaactttaagaaaagtttcattagaagacaagaaaataatattggccatttgttagcaatgacgtcattattttatgctagt |
35051642 |
T |
|
| Q |
1168 |
tcccgagttcatgattatatgccatcttgtatt |
1200 |
Q |
| |
|
|||| ||| |||| |||| |||||||||||| |
|
|
| T |
35051641 |
tcccacattcttgataatattccatcttgtatt |
35051609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 1063 - 1181
Target Start/End: Original strand, 8237318 - 8237434
Alignment:
| Q |
1063 |
aaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatg |
1162 |
Q |
| |
|
||||||||||||| | | | ||||| |||||||||||||||||||| ||||| |||||||| ||||| |||||||| ||||| || || ||||||||| |
|
|
| T |
8237318 |
aaaacttcacttagaatttaccaaaattttaagataagtttcattag--gacaagcaaataatattgccgacttgttagctaggacgacaatatcttatg |
8237415 |
T |
|
| Q |
1163 |
ctagttcccgagttcatga |
1181 |
Q |
| |
|
| |||||| |||||||| |
|
|
| T |
8237416 |
ttggttcccatgttcatga |
8237434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 36553923 - 36553874
Alignment:
| Q |
159 |
aaacatgatcatgctcaacattgatccttgctgacatggaaaccgaaaaa |
208 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||| |||| |
|
|
| T |
36553923 |
aaacatgatcatgctcaacaatgatccttgatgacatggaaaccggaaaa |
36553874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 595 - 692
Target Start/End: Complemental strand, 36553684 - 36553584
Alignment:
| Q |
595 |
tatcttctcaaaagactaat-aatttctaaaggggatagagatctccaaaaagatat-gaaaataaatctcatatta-ctaataatcatctacaattctc |
691 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||| ||||||||| |||||||| ||||| ||||||||| | | | ||||||||||||| |||||| |
|
|
| T |
36553684 |
tatcttctcaaaagactaataaatttctaaaagggacagagatctcatgaaagatatggaaaaaaaatctcatgtcaccgaataatcatctactattctc |
36553585 |
T |
|
| Q |
692 |
a |
692 |
Q |
| |
|
| |
|
|
| T |
36553584 |
a |
36553584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 36533545 - 36533486
Alignment:
| Q |
136 |
ttattgtccattcaaact-gcactaaacatgatcatgctcaacattgatccttgctgaca |
194 |
Q |
| |
|
||||| ||||||||| || || ||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
36533545 |
ttattctccattcaaccttgccctaaacatgatcatgctaaacaatgatccttgctgaca |
36533486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 36553990 - 36553935
Alignment:
| Q |
22 |
cagtacaagcctcgatgctattcatccgtgatgtttcacatctgccccacaagcat |
77 |
Q |
| |
|
||||| ||||||||||||||||||||| | ||||||||||| ||| || ||||||| |
|
|
| T |
36553990 |
cagtagaagcctcgatgctattcatccttaatgtttcacatttgctcctcaagcat |
36553935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 567 - 600
Target Start/End: Complemental strand, 36553722 - 36553689
Alignment:
| Q |
567 |
ttgtcccaagtcactaatatctgaacactatctt |
600 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
36553722 |
ttgtcccaagtcactaatatttgaacactatctt |
36553689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 227; Significance: 1e-124; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-124
Query Start/End: Original strand, 694 - 1088
Target Start/End: Original strand, 4430426 - 4430817
Alignment:
| Q |
694 |
aggagagaacaaggagaataccacaatagtggcgtggcggatcacagacaagagaattggattagaccagtagctggggaagtgaagtgcaatgtcgatg |
793 |
Q |
| |
|
||||||||||||||| |||||||||| | ||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4430426 |
aggagagaacaaggaaaataccacaacaatggaatggcggatcaca----agagaggtggattagaccagtagctggggaagtgaagtgcaatgttgatg |
4430521 |
T |
|
| Q |
794 |
cagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtg-atcgatgggagttcattaaagcaaagacagcgtggtacaaaggtc |
892 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| ||| | ||||||||| ||| |
|
|
| T |
4430522 |
cgacaatttttaaggatcaaggatgttatggggtcggtatgtgtctaagaggtgtatcgagaggagttcatttaagcaaatacatcatggtacaaaagtc |
4430621 |
T |
|
| Q |
893 |
tcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttgattgcaa |
992 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||| |||||||||| ||||||| |||||||||| ||| || |||||||||||||| ||||||| |
|
|
| T |
4430622 |
tcccacaacccaaagaagcataagcagaaggtctaaaataagcgataatatggcttgatactatgaggattttcaaagtgtctatcgaactgaattgcaa |
4430721 |
T |
|
| Q |
993 |
gcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaa |
1088 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4430722 |
gtaagtggttgacggcatttctagcaacttcagcaccaatttcatgtttggcgcgattatgaatacttgcaaaacttcacttgtgaatcatcaaaa |
4430817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 734 - 1243
Target Start/End: Original strand, 23269729 - 23270237
Alignment:
| Q |
734 |
atcacagacaagagaattggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtat |
833 |
Q |
| |
|
|||| ||||||||| ||||||||| | |||||| |||||||||||| |||||||| || |||| ||||||||| |||| ||||||||| | | ||| |
|
|
| T |
23269729 |
atcaaagacaagaggggtggattagatcgttagctgcggaagtgaagtgtaatgtcgacgcgacaatctttaaggatcaaggttgttatgggattgatat |
23269828 |
T |
|
| Q |
834 |
gtgtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaa |
933 |
Q |
| |
|
||| | | ||| |||||| |||||||||| | ||| |||||||| ||||||| ||||||| | |||||||| || || ||||||||||||||||||||| |
|
|
| T |
23269829 |
gtgcttgacaggggatcgaggggagttcatgagagcgaagacagcttggtacagaggtctctctcaacccaatgaggcggaagcaagaggtctaaaagaa |
23269928 |
T |
|
| Q |
934 |
gcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagcaccaatt |
1033 |
Q |
| |
|
|||| || ||||||||||||| | || | | | |||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| |||||| | |
|
|
| T |
23269929 |
gcgagaaagtggcttggtactttaagatatacatcggtgtctatcgaacttgattgcaagcaa-tggttgacgacatctctagcaatctcaacaccaaat |
23270027 |
T |
|
| Q |
1034 |
ccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgttgccca |
1133 |
Q |
| |
|
||| ||| | ||| ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| || |
|
|
| T |
23270028 |
ccacgttcgacgctattctgaacacttgcaaagcttcacttatgaatcatcaaaactttaagataagtttcattagaagacaagcaaataatgttgctca |
23270127 |
T |
|
| Q |
1134 |
cttgttatctagggcgtcattatcttatgctagttcccgagttcatgattatatgccatcttgtattacaactactattagaaatgaaatgagttaagtt |
1233 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| | |||||||| |||| || |
|
|
| T |
23270128 |
cttgttagctagggagtcattatcttatgctagttcccaagttcatgattatatgccatcttgtattacaaatgctattaatagtgaaatgaattaactt |
23270227 |
T |
|
| Q |
1234 |
tgtttctgtc |
1243 |
Q |
| |
|
|||||||||| |
|
|
| T |
23270228 |
tgtttctgtc |
23270237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 971 - 1243
Target Start/End: Original strand, 26917294 - 26917566
Alignment:
| Q |
971 |
tgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaacttc |
1070 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||| || |||||| ||||||| ||| ||||| ||| ||||||| |||| |
|
|
| T |
26917294 |
tgtctatcgaacttgattgcaagcaagtggttgacggcatagctaggggactcaacaacaattcaatgtttgacgctattcttgatatttgcaaagcttc |
26917393 |
T |
|
| Q |
1071 |
acttatgaatcatcaaaa-ctttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttc |
1169 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||| |||||||||||| |||||| ||||||||| | || | ||||||||||||||||||||| || | |
|
|
| T |
26917394 |
actta-gaatctacaaaaactttaagataagttttattaggagacaagcaaatagtgttgcccatctactagcaagggcgtcattatcttatgcttgtcc |
26917492 |
T |
|
| Q |
1170 |
ccgagttcatgattatatgccatcttgtattacaactactattagaaatgaaatgagttaagtttgtttctgtc |
1243 |
Q |
| |
|
|| ||||||||| ||||||||||||| ||| ||| ||||| ||||||||||||||||||||||| |||| |
|
|
| T |
26917493 |
ccatgttcatgatcatatgccatcttgcattgagactgttattattaatgaaatgagttaagtttgtttttgtc |
26917566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 1090 - 1243
Target Start/End: Original strand, 4431011 - 4431164
Alignment:
| Q |
1090 |
tttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcccgagttcatgattatatgc |
1189 |
Q |
| |
|
|||||||||||||| ||||||||| || ||||||||||| ||||||||||| |||||||| |||||||||||||| ||| | | |||||| || |||| |
|
|
| T |
4431011 |
tttaagataagttttattaggagagaagcaaataatgtttcccacttgttagctagggcggaattatcttatgctaattctcaaattcatggttgcatgc |
4431110 |
T |
|
| Q |
1190 |
catcttgtattacaactactattagaaatgaaatgagttaagtttgtttctgtc |
1243 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||||||||||||||||||||| |
|
|
| T |
4431111 |
catcttgtattacaattattattagaattgaaatgagttaagtttgtttctgtc |
4431164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 1000 - 1170
Target Start/End: Original strand, 14964904 - 14965074
Alignment:
| Q |
1000 |
gttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaactttaagataa |
1099 |
Q |
| |
|
||||||| |||||||| ||| ||||||||||||| || || || |||| | || |||||||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
14964904 |
gttgacgacatctctaacaatttcagcaccaattttatattcaacgagattttaaacacttgcaaaatttaatttatgaatcatcaaaactttaagataa |
14965003 |
T |
|
| Q |
1100 |
gtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcc |
1170 |
Q |
| |
|
||||||| | ||||||| ||||||||||||||||||| ||| ||||||| ||||||||||| |||||||| |
|
|
| T |
14965004 |
gtttcatcaagagacaatcaaataatgttgcccacttattagttagggcgccattatcttatactagttcc |
14965074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 213; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 751 - 1234
Target Start/End: Complemental strand, 29468749 - 29468266
Alignment:
| Q |
751 |
tggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaattttt-aaggattaaggatgttatggggtcggtatgtgtctaagaggtgat |
849 |
Q |
| |
|
||||||||||| ||||| | || ||| | ||||||||||| |||| ||||||| |||||| || ||||||||||| || | ||||| |||||||| | |
|
|
| T |
29468749 |
tggattagaccggtagccagtgaggtggattgcaatgtcgacgcagtaattttttaaggatcaatgatgttatggg-tcagaatgtgcctaagaggggtg |
29468651 |
T |
|
| Q |
850 |
cgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttg |
949 |
Q |
| |
|
||| ||||||||||| ||| |||||| | ||||| ||||||||||||||||| |||||||| ||||| ||||||||||| ||| |||| |||||||| |
|
|
| T |
29468650 |
cgaggggagttcattggagcgaagacaacttggtataaaggtctcccacaacctaaagaagcgaaagcacgaggtctaaaaaaagaaataaagtggcttg |
29468551 |
T |
|
| Q |
950 |
gtactatgaggttttccagggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgat |
1049 |
Q |
| |
|
||||| |||||||| | ||| |||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |||||||| ||||| || |
|
|
| T |
29468550 |
gtactttgaggtttccttcggtatctatcgaacttgattgcaagcaagtagttgattgcatctctagcaactttagcaccaggtccatgttcggcgcaat |
29468451 |
T |
|
| Q |
1050 |
tctcaatacttgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcg |
1149 |
Q |
| |
|
|| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||| | |
|
|
| T |
29468450 |
cctgaatatttgcaaagcttcacttatgaatcatcaaaactttaagataagtttcattatgagacaaacaaataatgttgcatacttgttagctaggatg |
29468351 |
T |
|
| Q |
1150 |
tcattatcttatgctagttcccgagttcatgattatatgccatcttgtattacaactactattagaaatgaaatgagttaagttt |
1234 |
Q |
| |
|
||||||| |||||||||||| | |||||||||||| ||| |||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
29468350 |
tcattatgttatgctagttctcaagttcatgattacatgtcatcttgtattacaactactattattaatgaaatgagttgagttt |
29468266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 2e-55; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 886 - 1228
Target Start/End: Original strand, 9252262 - 9252603
Alignment:
| Q |
886 |
aaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttg |
985 |
Q |
| |
|
|||||| |||||||| |||| || | |||||||||| | ||||||||||||||| ||| ||| || | |||||||||| | |||||||| |||||| |
|
|
| T |
9252262 |
aaaggtatcccacaatccaacgaggtggaagcaagagatttaaaagaagcgataaattggtttgataatttgaggttttcttcg-tgtctatcaaacttg |
9252360 |
T |
|
| Q |
986 |
attgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatca |
1085 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| | |||||||||| |||||| |||| ||||| ||| | ||||| |||||||| |||||||||| |
|
|
| T |
9252361 |
attgtaagcaagtggttgacggcatctctagcaatctaagcaccaatttcatgttcagcgctattctgaatggtggcaaagcttcacttttgaatcatca |
9252460 |
T |
|
| Q |
1086 |
aaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcccgagttcatgattat |
1185 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| ||||||||| |||| |||||| | || ||| |||||||||| ||||||| | ||| |||||||| |
|
|
| T |
9252461 |
aaactttaacataagtttcattaaaagacaaacgaataatgttacccatttgttagcctggacgttattatcttatcctagttctcatgttaatgattat |
9252560 |
T |
|
| Q |
1186 |
atgccatcttgtattacaactactattagaaatgaaatgagtt |
1228 |
Q |
| |
|
||| |||||| |||||| ||| | ||| | |||||||||||| |
|
|
| T |
9252561 |
atgtcatcttatattacgactgttgttatatatgaaatgagtt |
9252603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 769 - 1030
Target Start/End: Complemental strand, 40728566 - 40728311
Alignment:
| Q |
769 |
ggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatg---ttatggggtcggtatgtgtctaagaggtgatcgatgggagttcatta |
865 |
Q |
| |
|
||||| ||||||| |||||| |||||| |||||||||||||| ||||| | |||||||||||| ||||| |||||||| || ||||||||| |
|
|
| T |
40728566 |
ggggaggtgaagtacaatgtagatgcaacaatttttaaggatcaaggaggcggttatggggtcggaatgtgcctaagagg------at---agttcatta |
40728476 |
T |
|
| Q |
866 |
aagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttttc |
965 |
Q |
| |
|
||| |||||| | ||||| | |||||||| | ||||||||||||||||||||||||||||||| ||||||| || ||| |||||||| |||||||| | |
|
|
| T |
40728475 |
gagccaagacatcttggtatacaggtctccaataacccaaagaagcagaagcaagaggtctaaaggaagcgacaaaatggtttggtactttgaggtttac |
40728376 |
T |
|
| Q |
966 |
cagggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagcacca |
1030 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
40728375 |
ttcgttgtctatcgaacttgattgcaagcaagtatttgacgacatctctagcaacttcagcacca |
40728311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 768 - 940
Target Start/End: Original strand, 10785850 - 10786022
Alignment:
| Q |
768 |
tggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaa |
867 |
Q |
| |
|
||||||||||||||| ||||| ||| || ||||||||||||| |||| ||||||||| ||||||||||| | ||||| |||||| |||||||||||| | |
|
|
| T |
10785850 |
tggggaagtgaagtgtaatgttgatacaacaatttttaaggaacaaggttgttatgggatcggtatgtgtttgagaggggatcgaggggagttcattaga |
10785949 |
T |
|
| Q |
868 |
gcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataa |
940 |
Q |
| |
|
|| |||||| | ||||||||||| |||||||||||||||||| | |||||||||||||||||||| |||||| |
|
|
| T |
10785950 |
gcgaagacaacttggtacaaaggcatcccacaacccaaagaagtaaaagcaagaggtctaaaagaaacgataa |
10786022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 797 - 1165
Target Start/End: Original strand, 37490630 - 37490999
Alignment:
| Q |
797 |
caatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctccc |
896 |
Q |
| |
|
|||||||||| || ||||||||||||||| || ||| |||| || | ||||||| |||||| |||| ||| |||||| | | || ||||| || || |
|
|
| T |
37490630 |
caatttttaaagagtaaggatgttatgggatcaacatgggtcttagcgatgatcgaggggagtacattggagcgaagacaacttcgtttaaaggccttcc |
37490729 |
T |
|
| Q |
897 |
acaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttgattgcaagcaa |
996 |
Q |
| |
|
|||| |||| | | ||||||| |||| ||||||||||||||| || ||||||| | |||||||| | | |||||||| |||||||||| |||||| |
|
|
| T |
37490730 |
acaatccaacgtggaggaagcaaaaggtttaaaagaagcgataaattgtcttggtaatttgaggtttccttcgttgtctatcaaacttgattgtaagcaa |
37490829 |
T |
|
| Q |
997 |
gtggttgacggcatctctagcaacttcagcaccaattccatgt-ttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaactttaag |
1095 |
Q |
| |
|
| ||||||| |||||||||||| ||| ||||||| ||||| ||| | ||| | ||| ||||||| ||||||| ||||||||||||||||| || |
|
|
| T |
37490830 |
atcgttgacgacatctctagcaatctcaataccaatttcatgtgttgacattattttgaatgattgcaaagcttcactactgaatcatcaaaactttcag |
37490929 |
T |
|
| Q |
1096 |
ataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgcta |
1165 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| |||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
37490930 |
ataagtttcattagaagacaagtaaataatgttgtccacttgttagctaggacgtcattatctcatgcta |
37490999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 820 - 1125
Target Start/End: Complemental strand, 13019258 - 13018965
Alignment:
| Q |
820 |
tatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaa |
919 |
Q |
| |
|
||||||||||| ||| |||| ||||| ||| || |||||||||||| || |||||| | |||| ||||| ||||||||| |||| || |||||||||| |
|
|
| T |
13019258 |
tatggggtcggcatgcgtcttagaggggattgaggggagttcattagggcgaagacaacttggtttaaaggcctcccacaatccaacgaggcagaagcaa |
13019159 |
T |
|
| Q |
920 |
gaggtctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaa |
1019 |
Q |
| |
|
| ||| ||||||||||||||| | | |||| | | ||| ||||| |||||||||||||||| |||| ||| ||||||| | |||||||||||| |
|
|
| T |
13019158 |
gtggtttaaaagaagcgataaattcgtttggcaattcgagattttcttcggtgtctatcgaacttaattgtaag----tggttgatgccatctctagcaa |
13019063 |
T |
|
| Q |
1020 |
cttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaaca |
1119 |
Q |
| |
|
| | |||||||||||||||| ||||| ||| || ||| |||||| | ||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
13019062 |
c--------ccattccatgtttggcgctattcttaatggttataaagcttcacatctgaatcatcaaaattttaagataagtttcattaggagacaatca |
13018971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 1059 - 1200
Target Start/End: Original strand, 19920791 - 19920932
Alignment:
| Q |
1059 |
ttgcaaaacttcacttatgaatc-atcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatc |
1157 |
Q |
| |
|
||||||||| ||||||| ||||| |||||||||||||| || |||||||||||| |||| |||||| |||| ||| |||||| | ||| |||||||||| |
|
|
| T |
19920791 |
ttgcaaaacatcactta-gaatctatcaaaactttaagctaggtttcattaggaaacaagcaaatagtgtttgccatttgttagcaaggacgtcattatc |
19920889 |
T |
|
| Q |
1158 |
ttatgctagttcccgagttcatgattatatgccatcttgtatt |
1200 |
Q |
| |
|
|||| | ||||||| |||||||||||||||||||||||||| |
|
|
| T |
19920890 |
ttataccagttcccacattcatgattatatgccatcttgtatt |
19920932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 925 - 1238
Target Start/End: Original strand, 8294968 - 8295281
Alignment:
| Q |
925 |
ctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttca |
1024 |
Q |
| |
|
|||||||| ||||||| |||||||| | |||||| | || | ||||||||||||||||||||||||||||||| || ||||||| || | ||| |
|
|
| T |
8294968 |
ctaaaagaggcgataaaatggcttggaagtatgagtctatctaaggtgtctatcgaacttgattgcaagcaagtgatttacggcatagcttggggactca |
8295067 |
T |
|
| Q |
1025 |
gcaccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatc-atcaaaactttaagataagtttcattaggagacaaacaaata |
1123 |
Q |
| |
|
|| ||||| ||||||||||| |||| ||| ||||||| ||||||||| ||||| |||||||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
8295068 |
acatcaatttcatgtttggcgttgttcttgatatttgcaaagcttcactta-gaatctgccaaaactttaagataagttttattaagagacaaataaata |
8295166 |
T |
|
| Q |
1124 |
atgttgcccacttgttatctagggcgtcattatcttatgctagttcccgagttcatgattatatgccatcttgtattacaactactattagaaatgaaat |
1223 |
Q |
| |
|
|||||| || ||| || | | |||||||||||||| || | | |||||||| |||| |||||||||||| | | |||||| |||||||| |
|
|
| T |
8295167 |
gtgttgctcatttgctaacaaatttgtcattatcttatgttaatctctacgttcatgaacatataccatcttgtattgagattgctattaataatgaaat |
8295266 |
T |
|
| Q |
1224 |
gagttaagtttgttt |
1238 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8295267 |
gagttaagtttgttt |
8295281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 969 - 1167
Target Start/End: Complemental strand, 24588736 - 24588542
Alignment:
| Q |
969 |
ggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaact |
1068 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||| ||||| ||| ||| ||| || |
|
|
| T |
24588736 |
ggtgtctatcgaacttgattgcaagcaagtggttgacgacataactaggggactcaacaccaattccatgtttggcgctattcttgatatttgtaaagct |
24588637 |
T |
|
| Q |
1069 |
tcacttatgaatc-atcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagt |
1167 |
Q |
| |
|
||||||| ||||| | |||||||| ||||||| ||||| | |||| |||||| ||||||||| | || |||||||||||||||||||||||| |
|
|
| T |
24588636 |
tcactta-gaatctaacaaaactt----gtaagttttattagaacacaatcaaatagtgttgcccattcactagaaagggcgtcattatcttatgctagt |
24588542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1084 - 1122
Target Start/End: Original strand, 13923026 - 13923064
Alignment:
| Q |
1084 |
caaaactttaagataagtttcattaggagacaaacaaat |
1122 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
13923026 |
caaaactttaagataagtttcattaggaaacaagcaaat |
13923064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1086 - 1199
Target Start/End: Original strand, 36359621 - 36359734
Alignment:
| Q |
1086 |
aaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcccgagttcatgattat |
1185 |
Q |
| |
|
|||||||||||||||||| || || ||||| |||| ||||| || | |||||| | ||||| ||||| || |||||||| || | | ||||||| || |
|
|
| T |
36359621 |
aaactttaagataagttttatcagacgacaagcaaacaatgtggctaatttgttagcaagggcttcattgtcatatgctaggtctcaatgtcatgatcat |
36359720 |
T |
|
| Q |
1186 |
atgccatcttgtat |
1199 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
36359721 |
atgccatcttgtat |
36359734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 83; Significance: 1e-38; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 784 - 1187
Target Start/End: Complemental strand, 18998 - 18603
Alignment:
| Q |
784 |
aatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaa-agcaaagacagcgtgg |
882 |
Q |
| |
|
||||||||| || ||||||| ||||| |||||||||| | |||||| |||||||| ||||| |||| | |||||| |||| ||| |||||| | ||| |
|
|
| T |
18998 |
aatgtcgatacaacaatttt-aaggagtaaggatgttgttgggtcgacatgtgtcttagaggggatcaaggggagtacattgggagcgaagacaacttgg |
18900 |
T |
|
| Q |
883 |
tacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaac |
982 |
Q |
| |
|
| |||||||||||||||||||| || || ||||||||||| ||||||||||| ||||||||| | | |||||| | ||||||||| |||| |
|
|
| T |
18899 |
tttaaaggtctcccacaacccaatgaggcgtaagcaagaggtttaaaagaagcg-------ggcttggtaatttaaggtttccgtcggtgtctattgaac |
18807 |
T |
|
| Q |
983 |
ttgattgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatca |
1082 |
Q |
| |
|
||||||| || ||||||||||||| ||| ||||| || ||| ||||||||||| |||| || ||| | ||| ||||||| |||||||| ||||||| |
|
|
| T |
18806 |
ttgattgtaaacaagtggttgacgacatatctagaaatctcaacaccaattccacgtttat-gctattttgaatggttgcaaagcttcacttctgaatca |
18708 |
T |
|
| Q |
1083 |
tcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcccgagttcatgat |
1182 |
Q |
| |
|
|||||| || |||| ||||||||||| || | ||| ||||||| |||||||||||||| | | | ||||||| || ||||||| ||| |||||||||| |
|
|
| T |
18707 |
tcaaaatttgaagacaagtttcattaagaaaaaaagaaataattttgcccacttgttagccaagttgtcattacctcatgctagctccaaagttcatgat |
18608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 2e-30; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 1026 - 1201
Target Start/End: Original strand, 5460873 - 5461048
Alignment:
| Q |
1026 |
caccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatc-atcaaaactttaagataagtttcattaggagacaaacaaataa |
1124 |
Q |
| |
|
||||||||||||||| ||||| ||||| | ||||||||| |||| ||| |||| | ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5460873 |
caccaattccatgttcggcgctattctagagacttgcaaagcttc-cttgagaatttaccaaaactttaagataagtttcattaggagacaagcaaatat |
5460971 |
T |
|
| Q |
1125 |
tgttgcccacttgttatctagggcgtcattatcttatgctagttcccgagttcatgattatatgccatcttgtatta |
1201 |
Q |
| |
|
|||||| |||||||| |||| | |||||||||||||||||| | | | |||||||| |||||||||||||||||| |
|
|
| T |
5460972 |
tgttgctgacttgttagctagaacatcattatcttatgctagtcctcaaattcatgatcatatgccatcttgtatta |
5461048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 913 - 1162
Target Start/End: Original strand, 28283782 - 28284031
Alignment:
| Q |
913 |
gaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttgattgcaagcaagtggttgacggcatct |
1012 |
Q |
| |
|
|||||||| | | |||||||||| |||| |||||| ||| | |||||||| | |||||||| ||||||||| | ||||||||| ||| | ||||| |
|
|
| T |
28283782 |
gaagcaagggttttaaaagaagcaataaattggcttagtaatttgaggtttccttctgtgtctattgaacttgatcgtaagcaagtgcctgatgacatct |
28283881 |
T |
|
| Q |
1013 |
ctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggag |
1112 |
Q |
| |
|
||||||| ||| ||| |||| ||||| | | ||||| ||| ||| || |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28283882 |
ctagcaatctcaacactgattctatgttcaacactattctgaatggctgctaagcttcacttctgaatcatcaaaactttaagataagtttcattaggag |
28283981 |
T |
|
| Q |
1113 |
acaaacaaataatgttgcccacttgttatctagggcgtcattatcttatg |
1162 |
Q |
| |
|
|||||||||||||| || ||||||||| |||| |||||||||||||| |
|
|
| T |
28283982 |
acaaacaaataatgatgttcacttgttagtcagggtgtcattatcttatg |
28284031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 1076 - 1238
Target Start/End: Original strand, 29443757 - 29443918
Alignment:
| Q |
1076 |
tgaatcatcaaaactttaagataagttt-cattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcccgag |
1174 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||| ||||||| ||| ||||||||| | ||||| | ||||||||||| | |||| | | |
|
|
| T |
29443757 |
tgaatcatcaaaactttaagataagttttcattt--agacaagcaaataaatttgttcacttgttagcaagggcattattatcttatgtttgttctcatg |
29443854 |
T |
|
| Q |
1175 |
ttcatgattatatgccatcttgtattacaactactattagaaatgaaatgagttaagtttgttt |
1238 |
Q |
| |
|
|||||||||||||| ||| ||||||||| | |||| ||| ||||||||||||| ||||||||| |
|
|
| T |
29443855 |
ttcatgattatatgtcatattgtattacgattactgttattaatgaaatgagttgagtttgttt |
29443918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 2e-21; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 1060 - 1201
Target Start/End: Complemental strand, 43000554 - 43000413
Alignment:
| Q |
1060 |
tgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatctt |
1159 |
Q |
| |
|
|||||| ||||||||| || ||||||||||||| |||||||| |||||||||||| |||| ||| || | || ||||| ||| || ||||||||||| |
|
|
| T |
43000554 |
tgcaaagcttcacttaaaaaaaatcaaaactttaatataagttttattaggagacaagcaaacaatattactcatttgtttgctaaggtgtcattatctt |
43000455 |
T |
|
| Q |
1160 |
atgctagttcccgagttcatgattatatgccatcttgtatta |
1201 |
Q |
| |
|
|||||| || || |||||||||||||||| ||||||| |||| |
|
|
| T |
43000454 |
atgctaatttccaagttcatgattatatgtcatcttgcatta |
43000413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 1107 - 1198
Target Start/End: Original strand, 43381919 - 43382010
Alignment:
| Q |
1107 |
taggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcccgagttcatgattatatgccatcttgta |
1198 |
Q |
| |
|
||||||||||||||||| |||||| || |||||| | ||| ||||||||||||||||||||| || |||||||| |||| | |||||||| |
|
|
| T |
43381919 |
taggagacaaacaaatagtgttgctcatttgttaacaaggacgtcattatcttatgctagtttccacattcatgatcatattctatcttgta |
43382010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 970 - 1007
Target Start/End: Original strand, 43381799 - 43381836
Alignment:
| Q |
970 |
gtgtctatcgaacttgattgcaagcaagtggttgacgg |
1007 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43381799 |
gtgtctatcgaacttgattgcaagcaagtggttgacgg |
43381836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1090 - 1129
Target Start/End: Original strand, 29135150 - 29135189
Alignment:
| Q |
1090 |
tttaagataagtttcattaggagacaaacaaataatgttg |
1129 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
29135150 |
tttaagataagtttcgttaggagacaaataaataatgttg |
29135189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1068 - 1128
Target Start/End: Original strand, 35762788 - 35762849
Alignment:
| Q |
1068 |
ttcacttatgaatcatcaaaactttaaga-taagtttcattaggagacaaacaaataatgtt |
1128 |
Q |
| |
|
||||||| ||||||||||||||||||| | ||| ||| |||| | ||||||||||||||||| |
|
|
| T |
35762788 |
ttcacttgtgaatcatcaaaactttaatattaaattttattatgggacaaacaaataatgtt |
35762849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000008; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 1084 - 1169
Target Start/End: Complemental strand, 9738720 - 9738634
Alignment:
| Q |
1084 |
caaaactttaagataagttt-cattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttc |
1169 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||||| ||||||||||||| || |||||| |||| |||||||||||||||| |||||| |
|
|
| T |
9738720 |
caaaactttaagatattttttcattaggtgacaaccaaataatgttgctcatttgttagctagagcgtcattatcttatgttagttc |
9738634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1092 - 1228
Target Start/End: Original strand, 46107349 - 46107485
Alignment:
| Q |
1092 |
taagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcccgagttcatgattatatgcca |
1191 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||||||| || |||||| |||| |||||||||| ||||| ||||||| | |||| || |||||||| |
|
|
| T |
46107349 |
taagatacgtttcattaggtgacaagtaaataatgttgctcatttgttagctagagcgtcattatattatgttagttcctaaattcacaatcatatgcca |
46107448 |
T |
|
| Q |
1192 |
tcttgtattacaactactattagaaatgaaatgagtt |
1228 |
Q |
| |
|
||||||| || || ||||| ||||||||||||| |
|
|
| T |
46107449 |
acttgtatcacgacagttattactaatgaaatgagtt |
46107485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1085 - 1140
Target Start/End: Complemental strand, 21330833 - 21330778
Alignment:
| Q |
1085 |
aaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgtta |
1140 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| |||||||||||| || |||||| |
|
|
| T |
21330833 |
aaaactttaagataagttttattcggagacaaataaataatgttgctcatttgtta |
21330778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 1083 - 1127
Target Start/End: Original strand, 43059104 - 43059148
Alignment:
| Q |
1083 |
tcaaaactttaagataagtttcattaggagacaaacaaataatgt |
1127 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43059104 |
tcaaaattttaagataagtttcattataagacaaacaaataatgt |
43059148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1085 - 1168
Target Start/End: Complemental strand, 35529090 - 35529008
Alignment:
| Q |
1085 |
aaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagtt |
1168 |
Q |
| |
|
|||| ||||| ||||||||||||| | ||||||||||| ||||||| || |||||| |||| |||||||||||||| ||||| |
|
|
| T |
35529090 |
aaaattttaaaataagtttcattaagcgacaaacaaatgatgttgctca-ttgttagctagaatgtcattatcttatgttagtt |
35529008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1084 - 1126
Target Start/End: Complemental strand, 47798438 - 47798396
Alignment:
| Q |
1084 |
caaaactttaagataagtttcattaggagacaaacaaataatg |
1126 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
47798438 |
caaaactttaagataagttttattaagagacaaataaataatg |
47798396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 927 - 1040
Target Start/End: Original strand, 17571196 - 17571309
Alignment:
| Q |
927 |
aaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagc |
1026 |
Q |
| |
|
|||||||||||||| | ||| ||| | |||||||||| ||| |||||||||||| | || ||| | |||||||||| |||||||||||| ||| | |
|
|
| T |
17571196 |
aaaagaagcgataaactaacttagtaatttgaggttttcttcggtctctatcgaacttaactgtaagtatgtggttgacgacatctctagcaatctcaac |
17571295 |
T |
|
| Q |
1027 |
accaattccatgtt |
1040 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
17571296 |
accaattacatgtt |
17571309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1082 - 1171
Target Start/End: Complemental strand, 46016324 - 46016235
Alignment:
| Q |
1082 |
atcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttccc |
1171 |
Q |
| |
|
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| T |
46016324 |
atcaaaactataatataagtttcatttgaggacaatcaaacaatgttgctcatttgttagttagagcatcattatcttatgtttgttccc |
46016235 |
T |
|
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