View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11794_low_10 (Length: 495)
Name: NF11794_low_10
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Complemental strand, 51481195 - 51480728
Alignment:
| Q |
18 |
agtaatgtaaagtagacagagttctatgctgcaaagagagcaaaggaaggttatctacactataataaagttataatgaccatattagtttctatcctct |
117 |
Q |
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| T |
51481195 |
agtaatgtaaagtagacagagttctatgttgcaaagagagcaaaggaaggttatctacactataataaagttataatgaccatattagtttctatcctct |
51481096 |
T |
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| Q |
118 |
catgtaataataaaaaataagaatgagatactaaaggatctatagtaatnnnnnnngaactcttgctttgcttctcttgatctaatcaataagaagtttt |
217 |
Q |
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| T |
51481095 |
catgtaatagtaaaaaataagaatgagatattaaatgatctatagtaataaaaaaagaactcctgctttgcttctcttgatctaatcaataagaagtttt |
51480996 |
T |
|
| Q |
218 |
attcaatatttttagcttcacatatgtgggaatcatatatatgaattcatacattgctgcgaaaatatacctcctttcagctctaatataactggttttg |
317 |
Q |
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| T |
51480995 |
attcaatatttttagcttcacatatgtgggaatcatatatatgaattcatacattgctgcgaaaatatacctcctttcagctctaatataactgattttg |
51480896 |
T |
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| Q |
318 |
atcatttgatgtctcactgtcgttcttataccaaaaacaaatgttcatataattaacggaagtctctctcacctttaacttccaacataaccaataagaa |
417 |
Q |
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| T |
51480895 |
atcatttgatgtctcactgtcgttcttataccaaaaataaatgttcatataattaacggaagtctctctcaccttt-acttccagcataaccagtaagaa |
51480797 |
T |
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| Q |
418 |
aatgacaaataatcgagaccggtgtcataatgttgttaatggttcaataattattagtttcatctcact |
486 |
Q |
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| T |
51480796 |
aatgacaaataatcgagaccgatgtcataatgttgttaatggatcaataattattagtttcatcgcact |
51480728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 51463882 - 51463784
Alignment:
| Q |
105 |
gtttctatcctctcatgtaataataaaaaataagaatgagatactaaaggatctatagtaatnnnnnnngaactcttgctttgcttctcttgatctaat |
203 |
Q |
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| T |
51463882 |
gtttctaccctctcatgtaacaataaaaaataagaataagatattaaaggatctataataataaaaaatgaactattgctttgcttctcttgatctaat |
51463784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 438
Target Start/End: Complemental strand, 51463256 - 51463221
Alignment:
| Q |
403 |
cataaccaataagaaaatgacaaataatcgagaccg |
438 |
Q |
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| T |
51463256 |
cataaccgataagaaaatgacaaataatcgagaccg |
51463221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 48423147 - 48423080
Alignment:
| Q |
93 |
atgaccatattagtttctatcctctcatgtaataataa--aaaataagaatgagatactaaaggatct |
158 |
Q |
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| T |
48423147 |
atgacctttttagcttctatactctcatgtaataataaaaaaaataagaatgagatattaaagaatct |
48423080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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