View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11794_low_13 (Length: 457)
Name: NF11794_low_13
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Complemental strand, 283592 - 283165
Alignment:
| Q |
18 |
ttttttgtgcagtggatgactgcagggaggggaattattcactctgaaatgcctgcagaagcaaaaaacaatggactgcaattgtggatcaatttagcag |
117 |
Q |
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| T |
283592 |
ttttttgtgcagtggatgactgcagggaggggaattattcactctgaaatgcctgcagaagcaaaaaacaatggactgcaattgtggatcaatttagcat |
283493 |
T |
|
| Q |
118 |
ctaatgacaaaatgtaatgtgatatttatgtatttttaattattttattggttcgaagtagattttaccaataactaatctttgttgaagaatctggcta |
217 |
Q |
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| T |
283492 |
ctaatgacaaaatgtaatgtgatatttatgtatttttaattattttattggttcgaagtagattttaccaataactaatctttgttgaagaatctggcta |
283393 |
T |
|
| Q |
218 |
atcaattttagtgcggtctccccttccaactacannnnnnncattcacaaaactcaaactcgagaccttatttaagaattctaaatctagtttcacttga |
317 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
283392 |
atcaattttagtgcggtctccccttccaaccacatttttttcattcacaaaactcaaactcgagaccttatttaagaattctaaatctagtttcacttga |
283293 |
T |
|
| Q |
318 |
accaatgtaatgtaatactatatagtgtgaggttaaataatttaaannnnnnnnnnnnaatctatgttctcatatttagtcttacaaattacaaaactgc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
283292 |
accaatgtaatgtaatactatatagtgtgaggttaaataatttaaattttttgtttttaatctatgttctcatatttagtcttacaaattacaaaactgc |
283193 |
T |
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| Q |
418 |
atatatttagtctttttcaattcatctc |
445 |
Q |
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||||||||||||||||||||||| |||| |
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| T |
283192 |
atatatttagtctttttcaattcttctc |
283165 |
T |
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