View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11794_low_15 (Length: 436)
Name: NF11794_low_15
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 6 - 423
Target Start/End: Original strand, 3689310 - 3689727
Alignment:
| Q |
6 |
gtcaattttttctcagatggagggagcaccgaaagccgcagccgcagccattcagctaattcatttgcagaaccaactcatttgaaggaaacaatccaaa |
105 |
Q |
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| T |
3689310 |
gtcaattttttctcagatggagggagcaccgaaagccgcagccgcagccattcagctaattcatttgcagaaccaactcatttgaaggaaacaatccaaa |
3689409 |
T |
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| Q |
106 |
ctcaaccaaatggcataaaacttaatgaacaatctgctgtagcggcaacaaaaaccgatcaaattccaattccaattaagaagtgtttgcctcaaatgcc |
205 |
Q |
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| T |
3689410 |
ctcaaccaaatggcataaaacttaatgaacaatctgctgcagcggcaacaaaaaccgatcaaattccaattccaattaagaagtctttgcctcaaatgcc |
3689509 |
T |
|
| Q |
206 |
atatgtatcaacaaaagggaatggaccaaatgggaaagtagtgaatggatttttatacagatattcaaaatgtgatgaagttagcattgtttgtgtctgt |
305 |
Q |
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| T |
3689510 |
atatgtatccacaaaagggaatggatcaaatgggaaagtagtgaatggatttttatacagatattcaaaatgtgatgaagttagcattgtttgtgtctgt |
3689609 |
T |
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| Q |
306 |
catggaagcacattttcacctgctgagtttgtgcagcatgctggaggcactgacattacacaccctcttagacatatcacagtaaattcttctgctttta |
405 |
Q |
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| T |
3689610 |
catggaagcacattttcacctgctgagtttgtgcagcatgctggaggcactgacattacacaccctcttagacatatcacagtaaattcttctgctttta |
3689709 |
T |
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| Q |
406 |
gctgaagatcatcttttt |
423 |
Q |
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| T |
3689710 |
gctgaagatcatcttttt |
3689727 |
T |
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