View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11794_low_16 (Length: 421)
Name: NF11794_low_16
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 13 - 405
Target Start/End: Original strand, 42797203 - 42797592
Alignment:
| Q |
13 |
gagaagaaaagatcattgggcatgtttaattaccttcacatcatttggcgagatggacatggctttccaagagcgacttttgtacaaatcggccagaaac |
112 |
Q |
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| T |
42797203 |
gagaagaaaagatcattgggcatgtttaattaccttcacatcatttggcgagatggacatggctttccaagagcgacttttgtacaaatcggtcagaaac |
42797302 |
T |
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| Q |
113 |
cagtttgtacggtccattcatgactgtcgaatggaccgtacaaactgattgcgggatcaaaacaaaaccaggtctacctactcctagctcctccttcatg |
212 |
Q |
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| T |
42797303 |
cagtttgtacggtccattcatgactgtcgaatggaccgtacaaactgattgcgggatcaaaacaaaaccaggtctacctactcctagctcc---ttcatg |
42797399 |
T |
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| Q |
213 |
agagcccaaaaactgactggttacttgtcgttgtgatcatatactgcttctatcttcattcttcaatggttttccggctgcctggcatcaaaacaacaaa |
312 |
Q |
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| T |
42797400 |
agagcccaaaaactgactggttacttgtcgttgtgatcatatactgcttctatcttcattcttcaatggttttccggctgcctggcatcaaaacaacaaa |
42797499 |
T |
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| Q |
313 |
ggacactaatcttataaaggctaaatatcgggatttggaaacaaccacatgtgattatattgagttagacacaacaaacaaaaatgaccaaac |
405 |
Q |
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| T |
42797500 |
ggacactaatcttctaaaggctaaatatcgggatttggaaacaaccacatgtgattatattaagttagacacaacaaacaaaaatgaccaaac |
42797592 |
T |
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