View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11794_low_17 (Length: 405)
Name: NF11794_low_17
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 10120382 - 10120755
Alignment:
| Q |
1 |
caagactcagatgatattctgaagcataatcatcaaatgctagcagatgttcatagtggaaggtaagaaattaattcttgtattcatttggaatatccct |
100 |
Q |
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| T |
10120382 |
caagactcagatgatattctgaagcataatcatcaaatgctagcagatgttcatagtggaaggtaagaaattaattcttgtattcatttggaatatccct |
10120481 |
T |
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| Q |
101 |
ttttctatgtaatttcaggtatgtgatttttccttattttttaacagtgttgaacaagcacaggcttcacatatttgcagctacaaacatggtttcaaag |
200 |
Q |
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| T |
10120482 |
ttttctatgtaatttcaggtatgtgatttttccttattttttaacagtgttgaacaagcacaggcttcacatatttacagctacaaacatggtttcaaag |
10120581 |
T |
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| Q |
201 |
gctttgcagcaaagttgaccaatgaacaagcttaccaaatttcaagtcagtgacattttcctcttccttaaagcttcaatgcttaaaggatcctataatt |
300 |
Q |
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| T |
10120582 |
gctttgcagcaaagttgaccaatgaacaagcttaccaaatttcaagtcagtgacattttcctcttccttaaagcttcaatgcttaaagtatcctataatt |
10120681 |
T |
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| Q |
301 |
tttgttgtttacttatttatttggtttgaatgtgaccagaaatgccgggagtagtttctgtgttccccaattct |
374 |
Q |
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| T |
10120682 |
tttgttgtttacttatttatttggtttgaatgtgaccagaaatgccgggagtagtttctgtgttccccaattct |
10120755 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 30630415 - 30630322
Alignment:
| Q |
150 |
ttgaacaagcacaggcttcacatatttgcagctacaaacatggtttcaaaggctttgcagcaaagttgaccaatgaacaagcttaccaaatttc |
243 |
Q |
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| T |
30630415 |
ttgaagaagcacaagcttctcatatttatagctatagacatggattcagaggctttgcagctaagctcactgatgaacaagcttccaaaatttc |
30630322 |
T |
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