View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11794_low_2 (Length: 1002)
Name: NF11794_low_2
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_low_2 |
 | |
|
| [»] scaffold0479 (2 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 866; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 866; E-Value: 0
Query Start/End: Original strand, 11 - 963
Target Start/End: Original strand, 33810918 - 33811867
Alignment:
| Q |
11 |
cacagaagcagagtacatcacaatcactgaaggttgtaaggagatgatgtggatgaagaagttcctgcaagagttaggccagaatcaagaaagttatgtt |
110 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33810918 |
cacagaagcagagtacatcgcaatcactgaaggctgtaaggagatgatgtggatgaagaagttcctgcaagagttaggccagaatcaagaaatttatgtt |
33811017 |
T |
|
| Q |
111 |
ctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggatacgtgatg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33811018 |
ctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggattcgtgatg |
33811117 |
T |
|
| Q |
211 |
tgttagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaagagaagatagagttttg |
310 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33811118 |
tgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaagagaagatagagttttg |
33811217 |
T |
|
| Q |
311 |
taaagaggctgcaggcatagcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggtttccagccacaatagtaac |
410 |
Q |
| |
|
|||| | ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811218 |
taaacaagctgcaggcttggcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggtttccagccacaatagtaac |
33811317 |
T |
|
| Q |
411 |
aataatgcatcaattggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctaccatgtcagcaacaaattga |
510 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33811318 |
aataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctaccatgtcagtaacaaattga |
33811417 |
T |
|
| Q |
511 |
caaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcacacggttcaaaaccctctataaat |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811418 |
caaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcacacggttcaaaaccctctataaat |
33811517 |
T |
|
| Q |
611 |
agagaagagtttcagcaatgaaaccacaccacaacacaatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaa |
710 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811518 |
agagaagagtttcagcaatgaaa-cacaccacaacacaatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaa |
33811616 |
T |
|
| Q |
711 |
atatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgaaggtgaagatttgtattcccattattattatagtgg |
810 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811617 |
atatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtgg |
33811716 |
T |
|
| Q |
811 |
agatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgctaa |
910 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33811717 |
agatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgtgtcattttacgtttccgctaa |
33811814 |
T |
|
| Q |
911 |
agtgcctattttgagttcacggaggagggaaattaagctggcatttcccaaca |
963 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
33811815 |
agtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
33811867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 866; E-Value: 0
Query Start/End: Original strand, 11 - 963
Target Start/End: Original strand, 33815836 - 33816785
Alignment:
| Q |
11 |
cacagaagcagagtacatcacaatcactgaaggttgtaaggagatgatgtggatgaagaagttcctgcaagagttaggccagaatcaagaaagttatgtt |
110 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33815836 |
cacagaagcagagtacatcgcaatcactgaaggctgtaaggagatgatgtggatgaagaagttcctgcaagagttaggccagaatcaagaaatttatgtt |
33815935 |
T |
|
| Q |
111 |
ctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggatacgtgatg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33815936 |
ctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggattcgtgatg |
33816035 |
T |
|
| Q |
211 |
tgttagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaagagaagatagagttttg |
310 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33816036 |
tgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaagagaagatagagttttg |
33816135 |
T |
|
| Q |
311 |
taaagaggctgcaggcatagcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggtttccagccacaatagtaac |
410 |
Q |
| |
|
|||| | ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816136 |
taaacaagctgcaggcttggcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggtttccagccacaatagtaac |
33816235 |
T |
|
| Q |
411 |
aataatgcatcaattggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctaccatgtcagcaacaaattga |
510 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33816236 |
aataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctaccatgtcagtaacaaattga |
33816335 |
T |
|
| Q |
511 |
caaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcacacggttcaaaaccctctataaat |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816336 |
caaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcacacggttcaaaaccctctataaat |
33816435 |
T |
|
| Q |
611 |
agagaagagtttcagcaatgaaaccacaccacaacacaatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaa |
710 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816436 |
agagaagagtttcagcaatgaaa-cacaccacaacacaatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaa |
33816534 |
T |
|
| Q |
711 |
atatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgaaggtgaagatttgtattcccattattattatagtgg |
810 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816535 |
atatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtgg |
33816634 |
T |
|
| Q |
811 |
agatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgctaa |
910 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33816635 |
agatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgtgtcattttacgtttccgctaa |
33816732 |
T |
|
| Q |
911 |
agtgcctattttgagttcacggaggagggaaattaagctggcatttcccaaca |
963 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
33816733 |
agtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
33816785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 385 - 963
Target Start/End: Original strand, 33807638 - 33808213
Alignment:
| Q |
385 |
tgttggtttccagccacaatagtaacaataatgcatcaattggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807638 |
tgttggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa |
33807737 |
T |
|
| Q |
485 |
attctaccatgtcagcaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg |
584 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807738 |
attctaccatgtcagtaacaaattgacaaacttggcaatgggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg |
33807837 |
T |
|
| Q |
585 |
cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaaccacaccacaacacaatcctcactcacatagagttgagagaaaaatagaga |
684 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807838 |
cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaac-acaccacaacacaatcctcactcacatagagttgagagaaaaatagaga |
33807936 |
T |
|
| Q |
685 |
gttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgaaggtgaagat |
784 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33807937 |
gttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagat |
33808036 |
T |
|
| Q |
785 |
ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt |
884 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33808037 |
ttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt |
33808136 |
T |
|
| Q |
885 |
tgtgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaaca |
963 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
33808137 |
--tgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
33808213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 785 - 880
Target Start/End: Original strand, 16698504 - 16698601
Alignment:
| Q |
785 |
ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt |
880 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||||||||| | ||||||| | ||||||| || ||||||||||||||| ||||||| |||||||| |
|
|
| T |
16698504 |
ttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccataatttttccctttctcacattgagaaggatttccacactaaaatt |
16698601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 785 - 880
Target Start/End: Complemental strand, 22764002 - 22763905
Alignment:
| Q |
785 |
ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt |
880 |
Q |
| |
|
||||||||||||||| ||||||| | | |||||||||| | ||||||||||||||||| || |||| ||||||||||||||||| ||||||||| |
|
|
| T |
22764002 |
ttgtattcccattatcattatagcataagttttaagaggcccaatggtcccgtggtttttccctttctcatattgagaaggttttccatgctaaaatt |
22763905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 568 - 963
Target Start/End: Original strand, 50603003 - 50603403
Alignment:
| Q |
568 |
gaaccaagcatttaatgcacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaaccacaccacaaca-----caatcctcactcacat |
662 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||||||||||||||||| |||||||| | || |||||||||||| ||||||||||||||| |
|
|
| T |
50603003 |
gaaccaagcatttaatgcttacggttcatttctctctataaatagagaagagcttcagcaaagcaaacacaccacaacatagcacaatcctcactcacac |
50603102 |
T |
|
| Q |
663 |
agagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgt--gagagttgtatctacaaattgagatacatag |
760 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
50603103 |
agagttgagagaaaaatagaaagttcctcataagagtg--agagaaaaatatagtgagccaatttgtatgagagttgtatctacaaattgagatatatag |
50603200 |
T |
|
| Q |
761 |
ttaggtccacctgaaggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgaga |
860 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
50603201 |
ttaggtccatctaaaggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggttccgtggttttttcttactcacattgaga |
50603300 |
T |
|
| Q |
861 |
aggttttccacgctaaaattttgttgtgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttccca |
960 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
50603301 |
aggttttccacgctaaaattttattgtgtgtcattttacgttttcgctaaagtgtctattttgagttcacggaggagagaaattgtactggcatttccca |
50603400 |
T |
|
| Q |
961 |
aca |
963 |
Q |
| |
|
||| |
|
|
| T |
50603401 |
aca |
50603403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 11 - 349
Target Start/End: Complemental strand, 54968211 - 54967873
Alignment:
| Q |
11 |
cacagaagcagagtacatcacaatcactgaaggttgtaaggagatgatgtggatgaagaagttcctgcaagagttaggccagaatcaagaaagttatgtt |
110 |
Q |
| |
|
||||||||| || |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
54968211 |
cacagaagctgaatacatcgcaatcactgaaggttgtaaggagatcctgtggatgaagaagttcctgcaagagttaggccaaagtcaagaaagttatgtt |
54968112 |
T |
|
| Q |
111 |
ctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggatacgtgatg |
210 |
Q |
| |
|
|||||||| || ||||| || |||||||| ||||||||||| || |||||||| || || ||||||||||| |||||||||||||| ||||| ||||||| |
|
|
| T |
54968111 |
ctctattgcgacagtcagagcgcaattcatctcagcaagaactcaacataccactccagatcaaaacacattgatgtgaggtatcactggattcgtgatg |
54968012 |
T |
|
| Q |
211 |
tgttagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaagagaagatagagttttg |
310 |
Q |
| |
|
|||| || | |||| || || || |||||||| ||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
54968011 |
tgttggaaagtaaattgttgaaagtagagaaagttcacaccaatgagaacggagcagatatgatgacaaaagctctaccaaaagagaagatagagttttg |
54967912 |
T |
|
| Q |
311 |
taaagaggctgcaggcatagcagcaaccccaaactaatc |
349 |
Q |
| |
|
||| | ||||| || | |||||||||||||| ||||| |
|
|
| T |
54967911 |
caaacaagctgctggattggcagcaaccccaaattaatc |
54967873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 713 - 964
Target Start/End: Complemental strand, 54967477 - 54967209
Alignment:
| Q |
713 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgaaggtgaagat-ttgtattcccattattattata |
806 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| | ||||||| | ||||||||||||||| |||||| |
|
|
| T |
54967477 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
54967378 |
T |
|
| Q |
807 |
gtggagattt--aagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc----------- |
892 |
Q |
| |
|
||||| ||| ||||||| | |||||||||||||||||| || |||| ||||||||||||||||||||||||||| | || |||||| |
|
|
| T |
54967377 |
gtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgctttt |
54967279 |
T |
|
| Q |
893 |
attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaacat |
964 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||||||| |
|
|
| T |
54967278 |
atttcacgtttccgct--agtgcctattttgagttgacggaggagggaaattatgcaggcatttcccaacat |
54967209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 785 - 964
Target Start/End: Complemental strand, 44782713 - 44782523
Alignment:
| Q |
785 |
ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattt |
881 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||||||||| | |||||||||||||||| |||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
44782713 |
ttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtggttttttccctttctcatattgagaaggttttccacgctaaaattc |
44782614 |
T |
|
| Q |
882 |
tgttgtgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaacat |
964 |
Q |
| |
|
| || |||||| |||| ||||||||||| |||| |||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
44782613 |
tctt-tgtgtcattacgtttatatttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcaggcatttcccaacat |
44782523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 713 - 880
Target Start/End: Original strand, 39298736 - 39298908
Alignment:
| Q |
713 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgaaggtgaagat-ttgtattcccattattattata |
806 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| | ||| ||||| ||||||| | ||||||| | |||||||||| |||| |||||| |
|
|
| T |
39298736 |
atagtgagccaatttgtgagagt-gtccttacaaattgagagatatattgtagttagatccacctaagggtgaagttgttgtattccctttatcattata |
39298834 |
T |
|
| Q |
807 |
gtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt |
880 |
Q |
| |
|
||||| |||||||||| | |||||||||| ||||||||| |||||||||||||||||| ||| |||||||| |
|
|
| T |
39298835 |
gtggaagtttaagaggcacaagggtcccgtgatttttccttcatcacattgagaaggtttttcacactaaaatt |
39298908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 785 - 882
Target Start/End: Complemental strand, 18556491 - 18556392
Alignment:
| Q |
785 |
ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaatttt |
882 |
Q |
| |
|
|||||||| |||| | ||||||||||| ||||||||||| |||||||||||||||| |||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
18556491 |
ttgtattctcattgtcattatagtggaagtttaagaggctcgagggtcccgtggttttttgcctttctcagattgagaaggttttccacgctaaaatttt |
18556392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 707 - 811
Target Start/End: Complemental strand, 31725448 - 31725346
Alignment:
| Q |
707 |
aaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgaaggtgaagatttgtattcccattattattata |
806 |
Q |
| |
|
||||||||||| | |||||||||||| |||| |||||||||||||||||| || |||||||||| | |||||||||||||||| ||||||| ||||| |
|
|
| T |
31725448 |
aaaaatatagttaatcaatttgtgagaattgt--ctacaaattgagatacatcgtaaggtccacctaagtgtgaagatttgtattctcattattgttata |
31725351 |
T |
|
| Q |
807 |
gtgga |
811 |
Q |
| |
|
|||| |
|
|
| T |
31725350 |
ttgga |
31725346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 785 - 880
Target Start/End: Complemental strand, 54980031 - 54979933
Alignment:
| Q |
785 |
ttgtattcccattattattatagtggagattt--aagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt |
880 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| ||||||| | |||||||||||||||||| || |||| ||||||||||||||||| ||||||||| |
|
|
| T |
54980031 |
ttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggttttccatgctaaaatt |
54979933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 785 - 884
Target Start/End: Original strand, 17645800 - 17645897
Alignment:
| Q |
785 |
ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt |
884 |
Q |
| |
|
||||||| |||||| ||||||||||| ||||||| ||| | | |||||||||||||| || | | ||||||||||||||||||||||||||||||| |
|
|
| T |
17645800 |
ttgtattgtcattatcattatagtggaagtttaagacgctcaagagtcccgtggttttttttt--ttatattgagaaggttttccacgctaaaattttgt |
17645897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 387
Target Start/End: Complemental strand, 4836541 - 4836172
Alignment:
| Q |
15 |
gaagcagagtacatcacaatcactgaaggttgtaaggagatgatgtggatgaagaagttcctgcaagagttaggccagaatcaagaaagttatgttctct |
114 |
Q |
| |
|
||||| || |||||| ||||||||||||||||||||||||| | |||||||||||||| || ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4836541 |
gaagctgaatacatcgcaatcactgaaggttgtaaggagatcctatggatgaagaagtttctacaagagttatgccagaatcaagaaagttatgttctct |
4836442 |
T |
|
| Q |
115 |
attgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggatacgtgatgtgtt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4836441 |
attgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggatacgtgatgtgtt |
4836342 |
T |
|
| Q |
215 |
agagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaagagaagatagagttttgtaaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| | ||| | |||||||||||||||||||| ||| |
|
|
| T |
4836341 |
agagaataaactgctgcaaatagagaaaattcacacaaatgagaatggagcagacatgatgacaaaaccgctaccgaaagagaagatagagttttgcaaa |
4836242 |
T |
|
| Q |
315 |
gaggctgcaggcatagcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgt |
387 |
Q |
| |
|
| ||||| || || | ||||||||||||||||| ||||| || |||| ||||||||||||||||||||| |
|
|
| T |
4836241 |
caagctgctggaatggtagcaaccccaaactaat-taagg--cattcccctatggctggagggggagaattgt |
4836172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 171 - 349
Target Start/End: Complemental strand, 24380105 - 24379927
Alignment:
| Q |
171 |
tcaaaacacatcgatgtgaggtatcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagata |
270 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||||||||||| |||| |||| || || || |||||||| ||||||||||| | |||||||| || | |
|
|
| T |
24380105 |
tcaaaacacaatgatgtgaggtatcactggattcgtgatgtgttggagagtaaattgttgaaagtagagaaagttcacaccaataagaatggagccgaca |
24380006 |
T |
|
| Q |
271 |
tgatgacaaaagctctatcaaaagagaagatagagttttgtaaagaggctgcaggcatagcagcaaccccaaactaatc |
349 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||| | ||||| || | |||||||||||||||||||| |
|
|
| T |
24380005 |
tgatgacaaaacctctatcaaaagagaagatagagttttgcaaacaagctgctggattggcagcaaccccaaactaatc |
24379927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 713 - 964
Target Start/End: Complemental strand, 25857395 - 25857130
Alignment:
| Q |
713 |
atagtgagccaatttgtgagagttgtatctacaaatt--gagatacat---agttaggtccacctgaaggtgaagat-ttgtattcccattattattata |
806 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| |||||| || ||| || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
25857395 |
atagtgagccaatttgtgagagtgttccttacaaattaagagatatattgtagtgagatccacctaaaggtgaagttgttgtattcccattatcattata |
25857296 |
T |
|
| Q |
807 |
gtgga-gatttaagaggcttacgggtcccgtggtttttcctta-ctcacattgagaaggttttccacgctaaaattttgttgtgtgtc-----------a |
893 |
Q |
| |
|
||||| | |||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| | |
|
|
| T |
25857295 |
gtggaagttttaagaggcccaagggtcccgtggtttttccttttctcacattgagaaggttttccacgctaaaatt---ctctgtgtcattacgcttata |
25857199 |
T |
|
| Q |
894 |
ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaacat |
964 |
Q |
| |
|
||| ||||||||||| |||||||||||| |||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
25857198 |
tttcacgtttccgct--agtgcctattttaagttcacggaggagggaaattatgcaggcatttcccaacat |
25857130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 785 - 963
Target Start/End: Complemental strand, 4842837 - 4842648
Alignment:
| Q |
785 |
ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattt |
881 |
Q |
| |
|
||||||||| ||||| ||||||||||| | |||||||||| | |||||| ||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4842837 |
ttgtattcctattatcattatagtggaagttttaagaggcccaagggtcctgtggttttttccctttctcacattgagaaggttttccacgctaaaattc |
4842738 |
T |
|
| Q |
882 |
tgttgtgtgtcatt-----------ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaaca |
963 |
Q |
| |
|
| || ||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
4842737 |
tctt-tgtgtcattacacttatatttcacgtttccgcta--gtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
4842648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 713 - 963
Target Start/End: Complemental strand, 4835840 - 4835575
Alignment:
| Q |
713 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgaaggtgaagat-ttgtattcccattattattata |
806 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| | ||||||| | ||| ||||||||||| |||||| |
|
|
| T |
4835840 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgcattcccattatcattata |
4835741 |
T |
|
| Q |
807 |
gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgt-tgt------gtgt-catt |
895 |
Q |
| |
|
||||| | |||||||||| | |||||||||||||||| |||| |||||||||||||||||||||||||||||||| | | ||| || | ||| |
|
|
| T |
4835740 |
gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccacgctaaaattctctgtgtcattacgtttatatt |
4835641 |
T |
|
| Q |
896 |
ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaaca |
963 |
Q |
| |
|
| |||||||| || ||||||||||||||||||| ||||||||||||||| || |||||||||||||| |
|
|
| T |
4835640 |
tcacgtttccact--agtgcctattttgagttcatggaggagggaaattatgcaggcatttcccaaca |
4835575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 703 - 872
Target Start/End: Complemental strand, 8252853 - 8252686
Alignment:
| Q |
703 |
agagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttag----gtccacctgaaggtgaagatttgtattcccatta |
798 |
Q |
| |
|
|||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| ||| ||||| || ||| ||||| ||||||||||| ||| |
|
|
| T |
8252853 |
agagaaaaatatagtgagtcaatttatgatagttgtatctacaaattgagatacataattaattaagtccatctaaagatgaagctttgtattcccgtta |
8252754 |
T |
|
| Q |
799 |
ttattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacg |
872 |
Q |
| |
|
|||||| | || || ||||||| |||||| |||||| | |||||||||| |||||||||||||||||| |
|
|
| T |
8252753 |
ttattacattgaggagttaagagacttacgagtcccg------taccttactcacgttgagaaggttttccacg |
8252686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 785 - 882
Target Start/End: Complemental strand, 13465145 - 13465046
Alignment:
| Q |
785 |
ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatttt |
882 |
Q |
| |
|
||||||||||||||| ||||||||||| | |||||||||| | |||||| ||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
13465145 |
ttgtattcccattatcattatagtggatgttttaagaggcccaagggtcctgtggtttttccctttctcacattgagaaggttttccacgctaaaatttt |
13465046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 785 - 880
Target Start/End: Complemental strand, 27341120 - 27341025
Alignment:
| Q |
785 |
ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt |
880 |
Q |
| |
|
||||||| ||||||| ||| |||| || ||||||||| | |||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
27341120 |
ttgtatttccattatcattgtagtagaagtttaagaggtacaagggtcccgtggtttttcctttcttacattgagaaggttttccacgctaaaatt |
27341025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 785 - 889
Target Start/End: Original strand, 17845865 - 17845969
Alignment:
| Q |
785 |
ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt |
884 |
Q |
| |
|
||||||| ||||||| ||||||||||| ||||||||| | ||||| ||||||||||||| ||||||||| ||||||||||||| |||||||| | | |
|
|
| T |
17845865 |
ttgtatttccattatcattatagtggaagtttaagaggtccaaaggtcctgtggtttttccttcctcacattgggaaggttttccactctaaaattctct |
17845964 |
T |
|
| Q |
885 |
tgtgt |
889 |
Q |
| |
|
||||| |
|
|
| T |
17845965 |
tgtgt |
17845969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 785 - 880
Target Start/End: Complemental strand, 24379467 - 24379370
Alignment:
| Q |
785 |
ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt |
880 |
Q |
| |
|
||||||||| ||||| ||||||||||| | |||||||||| | | ||||||||||||||| || |||||||||||||||||||||||| ||||||| |
|
|
| T |
24379467 |
ttgtattcctattatcattatagtggaagttttaagaggcccaaagatcccgtggtttttccctttctcacattgagaaggttttccacgttaaaatt |
24379370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 913 - 963
Target Start/End: Original strand, 24380113 - 24380163
Alignment:
| Q |
913 |
tgcctattttgagttcacggaggagggaaattaagctggcatttcccaaca |
963 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
24380113 |
tgcctattttgagttcacagaggagggaaattatgcaggcatttcccaaca |
24380163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 814 - 880
Target Start/End: Complemental strand, 38994218 - 38994151
Alignment:
| Q |
814 |
tttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt |
880 |
Q |
| |
|
||||||||||| |||||||||||||||||| || ||| |||||||||||||||||||| ||||||| |
|
|
| T |
38994218 |
tttaagaggctcgagggtcccgtggtttttccctttctcgcattgagaaggttttccacgttaaaatt |
38994151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 590 - 963
Target Start/End: Complemental strand, 31152298 - 31151926
Alignment:
| Q |
590 |
ggttcaaaaccctctataaatagagaagagtttcagcaatgaaaccacaccacaacacaatcctcactcacatagagttgagagaaaaatagagagttcc |
689 |
Q |
| |
|
|||||||| | ||||||||||||||||||| |||||||| | || ||||||||||||||| | || || |||||||||||||||||||||||||| |
|
|
| T |
31152298 |
ggttcaaatctctctataaatagagaagagcttcagcaaagcaatcacaccacaacacaa--cacaatcctcgggagttgagagaaaaatagagagttcc |
31152201 |
T |
|
| Q |
690 |
tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgaaggtgaagatttgta |
789 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||||||| |||| |||||||||||||| |
|
|
| T |
31152200 |
tcgtaagagtgtgagagaaaaatatagtaagccaatttgtgagagttgtatctataaatttagatacgtagttaggtccatctgagggtgaagatttgta |
31152101 |
T |
|
| Q |
790 |
ttcccattattattatagtggagatttaagaggcttacgggtcccgtggt-ttttccttactcacattgagaaggttttccacgctaaaattttgttgtg |
888 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31152100 |
ttcccattattattatagtggagatttaagaggcctacggatcccgtggtttttttcttactcacattgagaaggttttccacattaaaattttgttgtg |
31152001 |
T |
|
| Q |
889 |
tgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaaca |
963 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
31152000 |
tgtcattttatgtttccgctaaagtgcctattttgagttcagagaggagggaaattatgcaggcatttcccaaca |
31151926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 22982137 - 22981841
Alignment:
| Q |
14 |
agaagcagagtacatcacaatcactgaaggttgtaaggagatgatgtggatgaagaagttcctgcaagagttaggccagaatcaagaaagttatgttctc |
113 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
22982137 |
agaagctgaatacatcacaatcactgaaggttgtaaggagatcatgtggatgaagaagttcctgcaagagttaggccagaatcaaaaaagctatgttctc |
22982038 |
T |
|
| Q |
114 |
tattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggatacgtgatgtgt |
213 |
Q |
| |
|
||||| || ||||| ||||| ||||| ||||||||||| ||||||||||| || || || |||||||| || |||||||| || || || |||||||| |
|
|
| T |
22982037 |
tattgcgacagtcagagtgcgattcatctcagcaagaactcgacataccactctagatcgaaacacattgacgtgaggtaccactgtattaatgatgtgt |
22981938 |
T |
|
| Q |
214 |
tagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaagagaagatagagttttg |
310 |
Q |
| |
|
| |||| |||| || || || |||||||| ||||||||||||| ||||||||||| |||||||||||| ||||| ||||||| ||||| |||||||| |
|
|
| T |
22981937 |
tggagagtaaattgttgaaagtagagaaagttcacaccaatgagaatggagcagacatgatgacaaaacctctaccaaaagaaaagattgagttttg |
22981841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 14 - 310
Target Start/End: Original strand, 23806271 - 23806567
Alignment:
| Q |
14 |
agaagcagagtacatcacaatcactgaaggttgtaaggagatgatgtggatgaagaagttcctgcaagagttaggccagaatcaagaaagttatgttctc |
113 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
23806271 |
agaagctgaatacatcacaatcactgaaggttgtaaggagatcatgtggatgaagaagttcctgcaagagttaggccagaatcaaaaaagctatgttctc |
23806370 |
T |
|
| Q |
114 |
tattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggatacgtgatgtgt |
213 |
Q |
| |
|
||||| || ||||| ||||| ||||| ||||||||||| ||||||||||| || || || |||||||| || |||||||| || || || |||||||| |
|
|
| T |
23806371 |
tattgcgacagtcagagtgcgattcatctcagcaagaactcgacataccactctagatcgaaacacattgacgtgaggtaccactgtattaatgatgtgt |
23806470 |
T |
|
| Q |
214 |
tagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaagagaagatagagttttg |
310 |
Q |
| |
|
| |||| |||| || || || |||||||| ||||||||||||| ||||||||||| |||||||||||| ||||| ||||||| ||||| |||||||| |
|
|
| T |
23806471 |
tggagagtaaattgttgaaagtagagaaagttcacaccaatgagaatggagcagacatgatgacaaaacctctaccaaaagaaaagattgagttttg |
23806567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 704 - 887
Target Start/End: Complemental strand, 1111564 - 1111378
Alignment:
| Q |
704 |
gagaaaaatatagtgagccaatttgtgagagttgtatcta--caaattgagatacatagttaggtccacctgaaggtgaagatttgtattcccattatta |
801 |
Q |
| |
|
|||||||||||| || ||||||||||||| | |||||| ||||||||||||||||||||||| || | | |||||| ||||||||| |||||||| |
|
|
| T |
1111564 |
gagaaaaatataaggaaccaatttgtgagaaatatatctatacaaattgagatacatagttaggtttacgtaagggtgaaagtttgtattctcattatta |
1111465 |
T |
|
| Q |
802 |
ttatagtgg-agatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgt |
887 |
Q |
| |
|
|||| | | ||||||||||| |||| | ||||| || |||||||||| | ||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
1111464 |
ttattatagtagatttaagagacttatgagtcccatgatttttccttatttacattcagaaggttttctacactaaaattttgttgt |
1111378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 785 - 963
Target Start/End: Original strand, 22981524 - 22981710
Alignment:
| Q |
785 |
ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatttt |
882 |
Q |
| |
|
||||||||||||||| ||||||||||| | |||||||||| | |||||||||||||||||| || |||||||||||||||||||||||||||||||| | |
|
|
| T |
22981524 |
ttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttccacgctaaaattct |
22981623 |
T |
|
| Q |
883 |
gttgtgtg-------tcatttt--acgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaaca |
963 |
Q |
| |
|
| |||| | ||||| |||||||||||| |||||| ||||||||||||||||| ||||||||| || | |||||||||||| |
|
|
| T |
22981624 |
ct-gtgtcattacgcttatttttcacgtttccgcta--gtgcctgttttgagttcacggaggggggaaattatgcagtcatttcccaaca |
22981710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 785 - 880
Target Start/End: Complemental strand, 23806884 - 23806787
Alignment:
| Q |
785 |
ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt |
880 |
Q |
| |
|
||||||||||||||| ||||||||||| | |||||||||| | |||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
23806884 |
ttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttccacgctaaaatt |
23806787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 1105201 - 1105112
Alignment:
| Q |
156 |
acataccattcaaggtcaaaacacatcgatgtgaggtatcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaatt |
245 |
Q |
| |
|
|||||||||| ||| |||||||||||| |||| || ||||||| |||| ||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
1105201 |
acataccatttaagatcaaaacacatcaatgtaagaaatcattgaatacatgacgtgttagagaataaactgctttaaatagagaaaatt |
1105112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 898 - 963
Target Start/End: Complemental strand, 23806761 - 23806698
Alignment:
| Q |
898 |
acgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaaca |
963 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||| ||||||||| || | |||||||||||| |
|
|
| T |
23806761 |
acgtttccgcta--gtgcctgttttgagttcacggaggggggaaattatgcagtcatttcccaaca |
23806698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 390
Target Start/End: Complemental strand, 1105101 - 1104988
Alignment:
| Q |
277 |
caaaagctctatcaaaagagaagatagagttttgtaaagaggctgcaggcatagcagcaaccccaaactaatctaaggatagtttccctttggctggagg |
376 |
Q |
| |
|
||||||||||| ||||| ||||| |||| |||| ||||| ||||||| | |||||| |||||| ||||||||| ||||||| | ||| ||| |||| |
|
|
| T |
1105101 |
caaaagctctaccaaaaaagaagttagatttttataaagcaattgcaggcttgacagcaatcccaaattaatctaagtatagttttcgtttagctagagg |
1105002 |
T |
|
| Q |
377 |
gggagaattgttgg |
390 |
Q |
| |
|
| || ||||||||| |
|
|
| T |
1105001 |
gagataattgttgg |
1104988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 158; Significance: 1e-83; HSPs: 2)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 24 - 349
Target Start/End: Original strand, 1949 - 2274
Alignment:
| Q |
24 |
tacatcacaatcactgaaggttgtaaggagatgatgtggatgaagaagttcctgcaagagttaggccagaatcaagaaagttatgttctctattgtgata |
123 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| || | |
|
|
| T |
1949 |
tacatcgcaatcactgaaggttgtaaggagatcctatggatgaagaagttcctacaagagttaggccaaaatcaagaaagctatgttctctattgcgaca |
2048 |
T |
|
| Q |
124 |
gtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggatacgtgatgtgttagagaataa |
223 |
Q |
| |
|
||||||| || ||||| ||||||||||| || ||||| || || || |||||||| || |||||||||||||| ||||| ||||||||||| |||| ||| |
|
|
| T |
2049 |
gtcaaagcgcgattcatctcagcaagaactcaacatatcactccagatcaaaacatattgatgtgaggtatcactggattcgtgatgtgttggagagtaa |
2148 |
T |
|
| Q |
224 |
actgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaagagaagatagagttttgtaaagaggctgca |
323 |
Q |
| |
|
| || || || |||||||| ||||||||||||| ||||||||||| |||||||| ||| ||||| ||||||||||||| |||||||| ||| | ||||| |
|
|
| T |
2149 |
attgttgaaagtagagaaagttcacaccaatgagaatggagcagacatgatgaccaaacctctaccaaaagagaagattgagttttgcaaacaagctgct |
2248 |
T |
|
| Q |
324 |
ggcatagcagcaaccccaaactaatc |
349 |
Q |
| |
|
|| | |||||||||||||||||||| |
|
|
| T |
2249 |
ggattggcagcaaccccaaactaatc |
2274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 785 - 964
Target Start/End: Original strand, 2747 - 2937
Alignment:
| Q |
785 |
ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattt |
881 |
Q |
| |
|
||||||||||||||| ||||||||||| | |||||||||| | |||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2747 |
ttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccacgctaaaattc |
2846 |
T |
|
| Q |
882 |
tgttgtgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaacat |
964 |
Q |
| |
|
| || |||||| |||| ||||||||||| |||| ||||||||||||||||||| |||||||||| || |||||||||||||| |
|
|
| T |
2847 |
tctt-tgtgtcattacgcttatatttcacgtttccgct--agtgtctattttgagttcacggagaagggaaattatgcatgcatttcccaacat |
2937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 4e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 748 - 963
Target Start/End: Complemental strand, 29707069 - 29706854
Alignment:
| Q |
748 |
ttgagatacatagttaggtccacctgaaggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttcctt |
847 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||| | | |||||||||||||||||||||||||||||| || | |||||||| || |||||| |
|
|
| T |
29707069 |
ttgagatacatagttaggtccacccgagggtgaagattttttattccattattattatagtggagatttaagaggtctatgagtcccgtgattgttcctt |
29706970 |
T |
|
| Q |
848 |
actcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaag |
947 |
Q |
| |
|
||||| |||||||||||||||| | ||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||| ||| ||||||| | |
|
|
| T |
29706969 |
actcatattgagaaggttttcctcactaaaattttgttgtgtgtcattttacatttttgctaaagtgcatattttaagttcacggatgagagaaattatg |
29706870 |
T |
|
| Q |
948 |
ctggcatttcccaaca |
963 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
29706869 |
gaggcattttccaaca |
29706854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 788 - 880
Target Start/End: Original strand, 27642132 - 27642225
Alignment:
| Q |
788 |
tattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggttttccacgctaaaatt |
880 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | || |||||| ||||| |||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
27642132 |
tattcccattattattatagtggaagtttaagagacccgaggaccccgtgattttttcctttctcacattgagaaggttttacacgccaaaatt |
27642225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 2e-48; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 24 - 390
Target Start/End: Complemental strand, 25003797 - 25003452
Alignment:
| Q |
24 |
tacatcacaatcactgaaggttgtaaggagatgatgtggatgaagaagttcctgcaagagttaggccagaatcaagaaagttatgttctctattgtgata |
123 |
Q |
| |
|
|||| |||||||||| | |||||||||||||| |||||||||||||||| ||||||||| ||||| ||||||| |||||||||||| ||||||||||| |
|
|
| T |
25003797 |
tacagcacaatcactaacggttgtaaggagatcccgtggatgaagaagttcatgcaagagtcaggcctgaatcaacaaagttatgttccctattgtgata |
25003698 |
T |
|
| Q |
124 |
gtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggatacgtgatgtgttagagaataa |
223 |
Q |
| |
|
|||||||||||||||||||||| || || |||||||| || |||||||| |||||||| ||||||||||| | |||||||||||||||| | |
|
|
| T |
25003697 |
gtcaaagtgcaattcacctcagaaataactcgacata-caatcaaggtc-aaacacatagatgtgaggta---------atgtgatgtgttagagaa-ag |
25003610 |
T |
|
| Q |
224 |
actgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaagagaagatagagttttgtaaagaggctgca |
323 |
Q |
| |
|
||| ||||||| |||||||| ||||| ||||||| || || |||||||||||||| ||||| |||| || | || |||||||||| || | |
|
|
| T |
25003609 |
actactgcaaaaagagaaaa---acaccgatgacaaagggacaaatatgatgacaaaaactctaccaaatga------aaaggtttgtaaagaatatgaa |
25003519 |
T |
|
| Q |
324 |
ggc-atagcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttgg |
390 |
Q |
| |
|
|| ||| |||||||||||||||||| | | |||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
25003518 |
agctata-cagcaaccccaaactaatttgaagatattttccctttggctggagggagagaattgttgg |
25003452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 713 - 963
Target Start/End: Complemental strand, 9757480 - 9757212
Alignment:
| Q |
713 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgaaggtgaagat-ttgtattcccattattattata |
806 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| | ||||||| | ||||||||||||||| |||||| |
|
|
| T |
9757480 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
9757381 |
T |
|
| Q |
807 |
gtgga---gatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc---------- |
892 |
Q |
| |
|
||||| |||||||||| | |||||||||||||||| |||| |||||||||||||||||||||||||||||||| | || |||||| |
|
|
| T |
9757380 |
gtggaagttttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttccacgctaaaattctctt-tgtgtcattacgctta |
9757282 |
T |
|
| Q |
893 |
-attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaaca |
963 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||| |||||| |
|
|
| T |
9757281 |
tatttcacgtttccgct--agtgcctattttgagttcacggaggaaggaaattatgcaggcatttaccaaca |
9757212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 785 - 882
Target Start/End: Complemental strand, 37287069 - 37286972
Alignment:
| Q |
785 |
ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatttt |
882 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
37287069 |
ttgtattcttattattattatagtggaagtttaagatgcttaagggtcccgtgatttttcctttttcacattgagaaggttttccatgctaaaatttt |
37286972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 785 - 880
Target Start/End: Complemental strand, 42683020 - 42682924
Alignment:
| Q |
785 |
ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt |
880 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||||||||| | |||||||||| ||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
42683020 |
ttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtgatttttcctttctcacattgagaaggttttccacgctgaaatt |
42682924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 361 - 391
Target Start/End: Original strand, 14178325 - 14178355
Alignment:
| Q |
361 |
tccctttggctggagggggagaattgttggt |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14178325 |
tccctttggctggagggggagaattgttggt |
14178355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 361 - 390
Target Start/End: Complemental strand, 28607548 - 28607519
Alignment:
| Q |
361 |
tccctttggctggagggggagaattgttgg |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28607548 |
tccctttggctggagggggagaattgttgg |
28607519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 785 - 945
Target Start/End: Complemental strand, 26674 - 26516
Alignment:
| Q |
785 |
ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt |
884 |
Q |
| |
|
|||||||| | |||| |||| |||||| |||||||||| | ||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
26674 |
ttgtattctcgttatcattagagtggaagtttaagaggcccaagggtcccgtagtttttccttactcacattgaaaaggttttccaccctaaaattttgt |
26575 |
T |
|
| Q |
885 |
tgtgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaatta |
945 |
Q |
| |
|
| |||| ||||||||||| |||||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
26574 |
t--gtgttattttacgttttcgctaaagtgtctattttgagttcacgaaggagggagatta |
26516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 3e-29; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 713 - 963
Target Start/End: Original strand, 41481548 - 41481815
Alignment:
| Q |
713 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgaaggtgaagat-ttgtattcccattattattata |
806 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| | ||||||| | ||||||||||||||| |||||| |
|
|
| T |
41481548 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
41481647 |
T |
|
| Q |
807 |
gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc----------- |
892 |
Q |
| |
|
||||| | |||||||||| | |||||||||||||||| |||| |||| ||||||||||||||||||||||||||| | || |||||| |
|
|
| T |
41481648 |
gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgtttat |
41481746 |
T |
|
| Q |
893 |
attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaaca |
963 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
41481747 |
atttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
41481815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 713 - 964
Target Start/End: Original strand, 36167547 - 36167814
Alignment:
| Q |
713 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgaaggtgaagat-ttgtattcccattattattata |
806 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| | ||||||| | ||||||||||||||| |||||| |
|
|
| T |
36167547 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
36167646 |
T |
|
| Q |
807 |
gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcatt-------- |
895 |
Q |
| |
|
||||| | |||||||||| | |||||| ||||||||| |||| |||| ||||||||||||||||||||||||||| | || ||||||||| |
|
|
| T |
36167647 |
gtggaagttttaagaggcccaagggtcc-gtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgtttat |
36167744 |
T |
|
| Q |
896 |
---ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaacat |
964 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
36167745 |
atttcacgtttccgcta--gtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaacat |
36167814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 785 - 958
Target Start/End: Complemental strand, 18951309 - 18951129
Alignment:
| Q |
785 |
ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattt |
881 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||||||| || | |||| |||||||||| |||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
18951309 |
ttgtattcccattatcattatagtggaagttttaagaagcccaaaggtctcgtggttttttccctttctcacattgagaaggttttccatgctaaaattc |
18951210 |
T |
|
| Q |
882 |
tgttgtgtgtc------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcc |
958 |
Q |
| |
|
||| | | |||| | ||||||||| |||||||||||||||||||||||||||| |||||| || ||||||||| |
|
|
| T |
18951209 |
tgtgtcattacgcttatatttcatgtttccgct--agtgcctattttgagttcacggaggaggcaaattatgcaggcatttcc |
18951129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 361 - 390
Target Start/End: Original strand, 12935055 - 12935084
Alignment:
| Q |
361 |
tccctttggctggagggggagaattgttgg |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
12935055 |
tccctttggctggagggggagaattgttgg |
12935084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 785 - 878
Target Start/End: Original strand, 37037942 - 37038035
Alignment:
| Q |
785 |
ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaa |
878 |
Q |
| |
|
|||||||| |||||| |||||||| | |||||||||| | |||||||||||||| ||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
37037942 |
ttgtattctcattatcgttatagtgaaagtttaagaggcccaagggtcccgtggtttctcctttctcacattgagaaggttttcctcgctaaaa |
37038035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 911 - 945
Target Start/End: Original strand, 37038074 - 37038108
Alignment:
| Q |
911 |
agtgcctattttgagttcacggaggagggaaatta |
945 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37038074 |
agtgcctattttgagttcacggaggagagaaatta |
37038108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 785 - 963
Target Start/End: Complemental strand, 342404 - 342217
Alignment:
| Q |
785 |
ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttt-ttcc-ttactcacattgagaaggttttccacgctaaaattt |
881 |
Q |
| |
|
||||||||||||||| ||||||||||| | |||||||||| | || ||||||||||| |||| || |||| |||||||||||||| |||||||||||| |
|
|
| T |
342404 |
ttgtattcccattatcattatagtggaagttttaagaggcccaaggatcccgtggtttcttccatttctcatattgagaaggtttttcacgctaaaattc |
342305 |
T |
|
| Q |
882 |
tgttgtg---------tgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaaca |
963 |
Q |
| |
|
| ||||| | |||| ||||||| ||| |||||||||||||||||||||||||||| |||||| || ||||||| |||||| |
|
|
| T |
342304 |
t-ttgtgtcattacgcttatatttcacgtttctgct--agtgcctattttgagttcacggaggaggaaaattatgcaggcattttccaaca |
342217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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