View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11794_low_23 (Length: 373)
Name: NF11794_low_23
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 35629905 - 35629547
Alignment:
| Q |
1 |
aatttctgagttactttctgaattaattttagatcgatcatctggaaatgagaaatggaatgacttggttttcattgatatcatactactgattttttcg |
100 |
Q |
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| T |
35629905 |
aatttctgagttaatttctgaattaattttagatcgatcatctggaaatgacaaatggaatgacatggttttcattgatatcatactactgattttttcg |
35629806 |
T |
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| Q |
101 |
ctcgcttgcatcataagcttggctc-atattttttccgttagatgatcttactggctattcctacgaacttattacccaattcactaagaatgagatttg |
199 |
Q |
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| T |
35629805 |
ctcgcttgcatcataagcttggctctttattttttccgttagatgatcttactggctattcctacgaacttattacccaattcactaagaatgagatttg |
35629706 |
T |
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| Q |
200 |
cttagaaatgttaacattctttttg-catatgttgaaatcaacttccatgcctcttctttttc-ataagttcccatctatgtctcctgttacctggttct |
297 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35629705 |
cttagaaatgttaacattctttttgtcatatgttgaaatctacttccatgcctcttctttttctataagttcccatctatgtctcctgttacctggttct |
35629606 |
T |
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| Q |
298 |
tgttactactttatagtttctccttcttgtattatatgcaaacaaaagtttctttttgt |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35629605 |
tgttactactttatagtttctccttcttgtattatatgcaaacaaaagtttctttttgt |
35629547 |
T |
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