View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11794_low_24 (Length: 338)
Name: NF11794_low_24
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_low_24 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 142 - 338
Target Start/End: Complemental strand, 13162563 - 13162360
Alignment:
| Q |
142 |
caacatagcggaggttgcagtactaacacactccataattcacatccttcattttatcgaaaaacccattttttccatcaccgcatccaaataattacaa |
241 |
Q |
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| T |
13162563 |
caacatagcggaggttgcagtactaacacactccataatccacatccttcattttatcgaaaaacccattttttccatcaccgcatccaaataattacaa |
13162464 |
T |
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| Q |
242 |
ttcactgaataatacg-cttgtcaaaatccactttaaa------caactctttattccattttttagcatcatatatcacttcattagcaacaagaatac |
334 |
Q |
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| T |
13162463 |
ttcagtgagtaatacgccttgtcaaaatccactttaaacataatcaactctttattccattttttagcatcatatatcacttcattagcaacaaaaatac |
13162364 |
T |
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| Q |
335 |
catc |
338 |
Q |
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|||| |
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| T |
13162363 |
catc |
13162360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 13162722 - 13162590
Alignment:
| Q |
12 |
catcaccaactatataacctttaaacaacccaacatcaacttaagcattcaacaaacatttaatccttcaattgccatcaagaacaagaacaaagacaaa |
111 |
Q |
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| T |
13162722 |
catcaccaactatataacctttaaacaacccaacatcaacttaagcattcaacaaacatttaatccttcaattgccatcaagaacaagaacaaagacaaa |
13162623 |
T |
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| Q |
112 |
cgatctccctgccttaagtctctcccaaatcaa |
144 |
Q |
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| T |
13162622 |
cgatctccctgccttaagtctctcccaaatcaa |
13162590 |
T |
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