View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11794_low_27 (Length: 261)
Name: NF11794_low_27
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_low_27 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 46 - 261
Target Start/End: Original strand, 33612755 - 33612968
Alignment:
| Q |
46 |
caaacttgtacactaggtgaaagaacacaattattacaaaacattagatttatattgttcaaaaggaagatgtaggtggacaatgaagaagctcaacctt |
145 |
Q |
| |
|
||||||||| || | |||| ||||| |||||||||||||||||||||||||||||||||||||||||| || |||| |||||| |||| |||||||||| |
|
|
| T |
33612755 |
caaacttgtccagtgggtggaagaatccaattattacaaaacattagatttatattgttcaaaaggaagctgcaggtagacaatcaaga-gctcaacctt |
33612853 |
T |
|
| Q |
146 |
gcttcaccttgccatatctcaaagacaacggctcatcatcggagtcaatctcaacaaaggtactctccagattcctcttcacaccaacacaggtggtacg |
245 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||| || ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
33612854 |
gcttcaacttgccatatctcaaagacaa-ggctcatcatcagaatcaatctcaacgaaggtaccctccagattcctcttcacaccaacacaggtggtatg |
33612952 |
T |
|
| Q |
246 |
catatcagattcacca |
261 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
33612953 |
caaatcagattcacca |
33612968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 46 - 261
Target Start/End: Complemental strand, 33439007 - 33438797
Alignment:
| Q |
46 |
caaacttgtacactaggtgaaagaacacaattattacaaaacattagatttatattgttcaaaaggaagatgtaggtggacaatgaagaagctcaacctt |
145 |
Q |
| |
|
||||||||| || | |||| |||||| |||||||||||||||||||||||||||||||||| |||| || |||||| |||| |||| |||||||||| |
|
|
| T |
33439007 |
caaacttgtccagtgggtggaagaacccaattattacaaaacattagatttatattgttcagaagg----tgcaggtggtcaatcaaga-gctcaacctt |
33438913 |
T |
|
| Q |
146 |
gcttcaccttgccatatctcaaagacaacggctcatcatcggagtcaatctcaacaaaggtactctccagattcctcttcacaccaacacaggtggtacg |
245 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| ||| || |||||||||||||||||| |||||| ||| |
|
|
| T |
33438912 |
gcttcaacttgccatatctcaaagacaatggctcatcatcagaatcaatctcaacaaaggtaccctctagtttcctcttcacaccaacagaggtggaacg |
33438813 |
T |
|
| Q |
246 |
catatcagattcacca |
261 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
33438812 |
catatccgattcacca |
33438797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University