View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11794_low_28 (Length: 253)
Name: NF11794_low_28
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_low_28 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 22 - 253
Target Start/End: Complemental strand, 12175486 - 12175255
Alignment:
| Q |
22 |
ataatgactggagtaagatcatgcgatatataattaatgttgggaaaattgagaacagatttattaccatcttttttgtcagatttctcagctgcggaga |
121 |
Q |
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| T |
12175486 |
ataatgaacggagtaagatcatgcggtatataattaatgttgggaaaattgagaacagatttattaccatcttttttgtcagatttctcagctgcggaga |
12175387 |
T |
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| Q |
122 |
tgagaagaatggaagccaagagcatagctagaaaaagtaaccctttggaattcattttcttataacttactttgaaactattgtatattgatcgatgaaa |
221 |
Q |
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| T |
12175386 |
tgagaagaatggaagccaagagcatagctagaaaaagtaaccctttggaattcattttcttataacttactttgaaactattgtatattgatcgatgaaa |
12175287 |
T |
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| Q |
222 |
atgaagtggctgaaagttatgtatttataggc |
253 |
Q |
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| T |
12175286 |
atgaagtgactgaaagttatgtatttataggc |
12175255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 83 - 252
Target Start/End: Complemental strand, 12188394 - 12188230
Alignment:
| Q |
83 |
tattaccatcttttttgtcagatttctcagctgcggagatgagaagaatggaagccaagagcatagctagaaaaagtaaccctttggaattcattttctt |
182 |
Q |
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| T |
12188394 |
tattaccatcttttttatcagatttctcagcag---agatgagaaggatggaagccagcaacatagtaagaaaaagtaaccctttggaattcattttctt |
12188298 |
T |
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| Q |
183 |
ataacttactttgaaactattgtatattgatcgatgaaaatgaagtggctgaaagttatgtatttatagg |
252 |
Q |
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| T |
12188297 |
atagcttattgtgaaactattg--tattgatcgatgaaaatgaagtgtctgaaagttatgtatttatagg |
12188230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 12182389 - 12182224
Alignment:
| Q |
83 |
tattaccatcttttttgtcagatttctcagctgcggagatgagaagaatggaagccaagagcatagctagaaaaagtaaccctttggaattcattttctt |
182 |
Q |
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| T |
12182389 |
tattaccatcttttttatcagatttctcagcag---agatgagaaggatggaagccagcaacatagtaagaaaaagtaaccctttggaattcattttgtt |
12182293 |
T |
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| Q |
183 |
ataacttactttgaaactattgtatattgatcgatgaaaatgaagtggctgaaagttatgtatttataggc |
253 |
Q |
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| T |
12182292 |
atagcttatcgtgaaactattg--tattgatcgatgaaaatgaagtgtctgaaagttatgtatttataggc |
12182224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 12149528 - 12149469
Alignment:
| Q |
121 |
atgagaagaatggaagccaagagcatagctagaaaaagtaaccctttggaattcattttc |
180 |
Q |
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| T |
12149528 |
atgagaaggatggaagccaacaacatggctagaaaaagtaacgccttggaattcattttc |
12149469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 12146282 - 12146339
Alignment:
| Q |
122 |
tgagaagaatggaagccaagagcatagctagaaaaagtaaccctttggaattcatttt |
179 |
Q |
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| T |
12146282 |
tgagaaggatggaagccaacaacatagctagaaaaagtaaagccttggaattcatttt |
12146339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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