View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11794_low_3 (Length: 902)
Name: NF11794_low_3
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_low_3 |
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| [»] scaffold0427 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 244 - 620
Target Start/End: Original strand, 16087433 - 16087805
Alignment:
| Q |
244 |
aataagcaccaaggattaaagacataagaaaatagctcaaaacaatattacatgaatcactacttcagctcatgatgattaagtttaaagtattctaact |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16087433 |
aataagcaccaaggattaaagacataagaaaatagctcaaaacaatattacatgaatcactacttcagctcatgatgattaagtttaaagtattctaact |
16087532 |
T |
|
| Q |
344 |
tctaagatgctatcatagttctcatttatacacacacaaaattgttaaaaaggaattctcccactataaatatcatatattcatgagaaccaagtttaaa |
443 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16087533 |
tctaagatgctatcatagttctcatttatacacacacaaaattgttaaaaaggaattctcccactataaatatcatatattcatgagaaccaagtttaaa |
16087632 |
T |
|
| Q |
444 |
ataatatttcactaattaaagtttatcaaaagatgacatagtaagtaatccacatctaataaaatatttctatttgttaatttcatgttaacttgtctca |
543 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16087633 |
ataatatttcactaattaaagtttatcaaaagatgacatagtaagtaatccacatctaataaaatatttctatttgttaatttcacgttaacttgtctca |
16087732 |
T |
|
| Q |
544 |
aacacattttgctcaaaataatagtttaaaaaaccaagatcacaatttgaacggtagaaattttaaaatcaacacaa |
620 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||| |
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| T |
16087733 |
aacacattttgctcaaaataatagtt--aaaaaccaagatcacaatttg-atggtagaaa-tttaaaatcaacacaa |
16087805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 718 - 884
Target Start/End: Original strand, 16087847 - 16088013
Alignment:
| Q |
718 |
ttatctttgcttaatattgttgtataagttggctgctgacatagttctatcaacatcctccaccaatatttcatgggacaccttgtagaagaaggtcttt |
817 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16087847 |
ttatctttgcttaatattgttgtataagttggctgctgacatagttctatcaacatcctccaccaatatttcatgggacaccttgtagaagaaggtcttt |
16087946 |
T |
|
| Q |
818 |
aacttgcggttacagttacacggataaattccaagattgttgtacctgatgcgtaaacggtaaccgc |
884 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
16087947 |
aacttgcggttacagttacagggataaattccaagattgttgtacctgatgcgtaaacagtaaccgc |
16088013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 16087279 - 16087434
Alignment:
| Q |
17 |
gcctataaaccagcaaagctttaaaaagcaaacatgtttaacatattagtcaggcgctcggttcaaagaactttacacgttacattataatatgattata |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
16087279 |
gcctataaaccagcaaagctttaaaaagcaaacatgtttaacatattagtcaggcgctcggttcaaagaactttac----cacattataatatgattata |
16087374 |
T |
|
| Q |
117 |
cgttccaacataatgactcaagattttagaaagtcaaaatcgcacactctcatactctaa |
176 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16087375 |
tgttccaacatagtgactcaagattttagaaagtcaaaatcgcacactctcatactctaa |
16087434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 4e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 358 - 664
Target Start/End: Original strand, 38643027 - 38643343
Alignment:
| Q |
358 |
atagttctcatttatacacacaca------aaattgttaaaaaggaattctcccactataaatatcatatattcatgagaaccaagtttaaaataatatt |
451 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
38643027 |
atagttctcatttatacacacacacaaaaaaaaatgttaaaaaggaattctcctactataaatatcacatattcatgagaaccaagactaaaataatatt |
38643126 |
T |
|
| Q |
452 |
tcact-aattaaagtttatcaaaagatgacatagtaagtaatccacatctaataaaatatttctatttgttaatttcatgttaacttgtctcaaacacat |
550 |
Q |
| |
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||||| ||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||| || |||| |||||| ||| |||| |||||| || |
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| T |
38643127 |
tcactaaattaaactttatcaaaa-atgacatagtaagtattccacatctaataaaatatttcaatctgtttatttcactataatttgtttcaaacgtat |
38643225 |
T |
|
| Q |
551 |
tttgctcaaaataatagtttaaaaaaccaagatcacaatttgaacggtagaaa----ttttaaaatcaacacaaaagtccatcttcattaataacaagct |
646 |
Q |
| |
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|||||||||| ||||||||||| | | ||||| |||||| || |||||||| ||||||||| | |||||||||||||||||||| || ||| || |
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| T |
38643226 |
tttgctcaaagtaatagtttaagagatcaagagtgcaattttaatggtagaaaacagatttaaaatccatacaaaagtccatcttcattactaccaaact |
38643325 |
T |
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| Q |
647 |
atcgtgatcataacaaca |
664 |
Q |
| |
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||||| || |||| |||| |
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| T |
38643326 |
atcgtaataataataaca |
38643343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 816 - 884
Target Start/End: Complemental strand, 5659887 - 5659818
Alignment:
| Q |
816 |
ttaacttgcggttacagttacac-ggataaattccaagattgttgtacctgatgcgtaaacggtaaccgc |
884 |
Q |
| |
|
|||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
5659887 |
ttaacttgcggtcacagttataaaggataaattccaagattgttgtacctgatgcgtaaacagcaaccgc |
5659818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 359 - 452
Target Start/End: Complemental strand, 19974514 - 19974422
Alignment:
| Q |
359 |
tagttctcatttatacacacacaaaattgttaaaaaggaattctcccactataaatatcatatattcatgagaaccaagtttaaaataatattt |
452 |
Q |
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|||| |||||| ||||||||| ||||| |||||||| ||||||||||||| |||||| || ||| ||||||| ||||| |||||| |||||||| |
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| T |
19974514 |
tagtcctcattcatacacaca-aaaatcgttaaaaaagaattctcccactgtaaataccacatactcatgagcaccaaatttaaattaatattt |
19974422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 733 - 790
Target Start/End: Complemental strand, 14658329 - 14658272
Alignment:
| Q |
733 |
attgttgtataagttggctgctgacatagttctatcaacatcctccaccaatatttca |
790 |
Q |
| |
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|||| ||| ||| |||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
14658329 |
attgctgtgtaatttggctgctgacatagttctatcaacatcctccaccaatacttca |
14658272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 746 - 790
Target Start/End: Complemental strand, 14655059 - 14655015
Alignment:
| Q |
746 |
ttggctgctgacatagttctatcaacatcctccaccaatatttca |
790 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
14655059 |
ttggctgctgacatagttctatcaacatcctccaccaatacttca |
14655015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 53838100 - 53838144
Alignment:
| Q |
318 |
atgattaagtttaaagtattctaacttctaagatgctatcatagt |
362 |
Q |
| |
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||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
53838100 |
atgattaagcttaaggtattctaacttctaagatgctatcatagt |
53838144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 839 - 884
Target Start/End: Original strand, 53731143 - 53731188
Alignment:
| Q |
839 |
ggataaattccaagattgttgtacctgatgcgtaaacggtaaccgc |
884 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||| | |||||| |
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|
| T |
53731143 |
ggataaattccaagattgttgtaccttatgtgtaaacagcaaccgc |
53731188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 816 - 875
Target Start/End: Complemental strand, 14059255 - 14059195
Alignment:
| Q |
816 |
ttaacttgcggttacagttacac-ggataaattccaagattgttgtacctgatgcgtaaac |
875 |
Q |
| |
|
|||||||||||| ||||||| | |||||||||||||||||||||||||||||| |||||| |
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|
| T |
14059255 |
ttaacttgcggtcacagttataaaggataaattccaagattgttgtacctgatgtgtaaac |
14059195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 746 - 790
Target Start/End: Original strand, 26947369 - 26947413
Alignment:
| Q |
746 |
ttggctgctgacatagttctatcaacatcctccaccaatatttca |
790 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
26947369 |
ttggttgctgacatagttctatcaacatcctccaccaatacttca |
26947413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0427
Description:
Target: scaffold0427; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 816 - 884
Target Start/End: Complemental strand, 5968 - 5899
Alignment:
| Q |
816 |
ttaacttgcggttacagttacac-ggataaattccaagattgttgtacctgatgcgtaaacggtaaccgc |
884 |
Q |
| |
|
|||||||||||| ||||||| | |||||||||||||||||||||||||| ||| |||||| | |||||| |
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|
| T |
5968 |
ttaacttgcggtcacagttataaaggataaattccaagattgttgtacctaatgtgtaaacagcaaccgc |
5899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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