View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11794_low_30 (Length: 246)
Name: NF11794_low_30
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 37493497 - 37493728
Alignment:
| Q |
1 |
cgcgggcctcaatgtaaagatttgctacttatatatagcactatactgctactagcagttaaatagaactattagaaaataaattcatctccattattat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37493497 |
cgcgggcctcaatgtaaagatttgctacttatatattgtactatactgctactagcagttaaatagaactattagaaaataaattcatctccattattat |
37493596 |
T |
|
| Q |
101 |
cgtacataattagagggccattcgtgctacataaaagaagagggccattcgtgtccaggactttttcagctaaaaacaaaatgtttatcagatttattcn |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37493597 |
cgtacataattagagggccattcgtgttacataaaagaagagggccattcgtgtccaggactttttcagctaaaaacaaaatgtttaccagatttattca |
37493696 |
T |
|
| Q |
201 |
nnnnnnnntgtttaccagataaagaaaaatat |
232 |
Q |
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|
|||||||||||||||||||||||| |
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| T |
37493697 |
aaaaaaaatgtttaccagataaagaaaaatat |
37493728 |
T |
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