View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11794_low_31 (Length: 239)
Name: NF11794_low_31
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 53488548 - 53488754
Alignment:
| Q |
14 |
cagagaaaaaagtggaaagaaatggccttacctaattgagcaacatcaatatcaattgtgagatacatagaagtgttcatacaagggtagcattaacaat |
113 |
Q |
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| T |
53488548 |
cagagaaaaaagtggaaagaaatggccttacctaattgagcaacatcaatatcaattgtgagatacatagaagtgttcatacaagggtagcattaacaat |
53488647 |
T |
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| Q |
114 |
agcagatagcaagtgcatagaacatcaaacaaattttaactggctgttgtttacattcaataacacaaacatctgaataaggatttataccttctaggag |
213 |
Q |
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| T |
53488648 |
agcagatagcaagtgcatagaacatcaaacaaattttaactggctgttgtttacattcaataacacaaacatctgaataaggatttataccttctaggag |
53488747 |
T |
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| Q |
214 |
gagttct |
220 |
Q |
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| T |
53488748 |
gagttct |
53488754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 46 - 213
Target Start/End: Original strand, 53497984 - 53498149
Alignment:
| Q |
46 |
taattgagcaacatcaatatcaattgtgagatacatagaagtgttcatacaagggtagcattaacaatagcagatagcaagtgcatagaacatcaaacaa |
145 |
Q |
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| T |
53497984 |
taattaagcagcatcgatatcaattgtgagatacagagcagtgttcatataagggtaacattaatagtagcagatagcaagtgaatagaacatcaaacag |
53498083 |
T |
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| Q |
146 |
attttaactggctgttgtttacattcaataacacaaacatctgaataaggatttataccttctaggag |
213 |
Q |
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| T |
53498084 |
attttaactggctgttttttaaattcaatagca-aaaaatttgaataagga-ttataccttctgggag |
53498149 |
T |
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