View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11794_low_32 (Length: 239)
Name: NF11794_low_32
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 27463629 - 27463488
Alignment:
| Q |
80 |
ctgttgctaagggcttgtcgttcttgtttctttgtagctcatcagagcatgttttgcggatgttttatgttgacacatgtaaatttaggtttggtacttg |
179 |
Q |
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| T |
27463629 |
ctgttgctaagggtttgttgttcttgtttctttgtagctcatcatagcatgttttgcagaggttttatgttgacacatgtaaatttaggttttgtacttg |
27463530 |
T |
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| Q |
180 |
ctaaggtagtaagttgtgtcaataataatgtcgcagacccaa |
221 |
Q |
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| T |
27463529 |
ctaaggtagtaagctgtgtcaataataacgtcgcaaacccaa |
27463488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 80 - 207
Target Start/End: Complemental strand, 27472236 - 27472109
Alignment:
| Q |
80 |
ctgttgctaagggcttgtcgttcttgtttctttgtagctcatcagagcatgttttgcggatgttttatgttgacacatgtaaatttaggtttggtacttg |
179 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
27472236 |
ctgttgctaagggcttgttgttcttgtttctttgaagctcatcatagcatgttttgcggaggttttatgttgacacatgtaaatttaggttttgtacttg |
27472137 |
T |
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| Q |
180 |
ctaaggtagtaagttgtgtcaataataa |
207 |
Q |
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| T |
27472136 |
ctaaggtagtaagctgtctcaataataa |
27472109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 80 - 222
Target Start/End: Complemental strand, 27484066 - 27483924
Alignment:
| Q |
80 |
ctgttgctaagggcttgtcgttcttgtttctttgtagctcatcagagcatgttttgcggatgttttatgttgacacatgtaaatttaggtttggtacttg |
179 |
Q |
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|||||||||||||| |||| |||||||||||| | ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||| |
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| T |
27484066 |
ctgttgctaagggcatgtctttcttgtttcttagcagctcatcatagcatgttttgcggaggttttatgttgacacatgtaaatttaggttttgtatttg |
27483967 |
T |
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| Q |
180 |
ctaaggtagtaagttgtgtcaataataatgtcgcagacccaaa |
222 |
Q |
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| T |
27483966 |
ctaaggtagtaagctgtgtcaataataacgtcgcaaacccaaa |
27483924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 80 - 207
Target Start/End: Original strand, 27519328 - 27519455
Alignment:
| Q |
80 |
ctgttgctaagggcttgtcgttcttgtttctttgtagctcatcagagcatgttttgcggatgttttatgttgacacatgtaaatttaggtttggtacttg |
179 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || |||||||||||||||| ||||||| |
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| T |
27519328 |
ctgtttctaagggcttgttgttcttgtttctttgtagctcatcatagcatgttttgcggaggttttatgttg-cagatgtaaatttaggttttgtacttg |
27519426 |
T |
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| Q |
180 |
ctaaggtagt-aagttgtgtcaataataa |
207 |
Q |
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|||| |||| ||| |||||||||||||| |
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| T |
27519427 |
ctaatttagtaaagctgtgtcaataataa |
27519455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 27484126 - 27484069
Alignment:
| Q |
4 |
atatgcaggtagaattcatctagcaaagatttgaattaaatgcaatatagcatttttt |
61 |
Q |
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||||||||| || |||||| ||||||||| ||||||| ||| ||||||||||| |||| |
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| T |
27484126 |
atatgcaggaagtattcatttagcaaagaattgaattcaattcaatatagcatgtttt |
27484069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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