View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11794_low_4 (Length: 768)
Name: NF11794_low_4
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 29259319 - 29259618
Alignment:
| Q |
16 |
cagaagcatgggcaaaagaaaatgtgggaacatcaaatagtagaagttggaaggtcagtactacagtagtacgagcatagcctaatatgtgtaaagtggt |
115 |
Q |
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| T |
29259319 |
cagaagcatgggcaaaagaaaatgtgggaacatcaaattgtagaagttggaaggtcattactacagta---cgagtatagcctaatatgtgtaaagtggt |
29259415 |
T |
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| Q |
116 |
cccttccccaccccaaagccaaaactacaaagtacaaacaaacatgtatagttggaagaggacccacctatcttgtagcaacaaaaggaagaagaacaag |
215 |
Q |
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| T |
29259416 |
cccttccccaccccaaagccaaaactacaaagtacaaacaaacatgtatagttggaagaggacccacctatcttgtagcaacaaaaggaagaagaacaag |
29259515 |
T |
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| Q |
216 |
aaacgcatgcatatatttcgtatagaatgaacctttaaaaacagacggcagtagttggtggtacaatctccatgatatacgtctcaaactatatgcgttt |
315 |
Q |
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| T |
29259516 |
aaacgcatgc--atatttcgtatagaatgaacctttaaaaacagacggtagtagttggtggtacaatctccatgatatacgtctcaaactatatgcgttt |
29259613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 473 - 751
Target Start/End: Original strand, 29259719 - 29259998
Alignment:
| Q |
473 |
taatgatagagagaattaa--attttatctatttaatactttgtactccattttgaatacatttatatggtcaaacattaataattaagttgcaaaagag |
570 |
Q |
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| T |
29259719 |
taatgatagagagaatttataattttatctatttaatactttgtacttcattttgaatacatttatatggtcaaacattaataattaagttgcaaaagag |
29259818 |
T |
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| Q |
571 |
aaatgtatttattttttgagagaaaaagaggaatgtattaattgatcatgacagatggtaagtagcagccataaatgtgtaacccttcttcatgtctatg |
670 |
Q |
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| T |
29259819 |
aaatgtatttattttttgagagaaaaagagaaatgtattaattgatcatgacagatggtaagtagcagccataaa--tgtaacccttcttcatgtctatg |
29259916 |
T |
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| Q |
671 |
taataaacatacggtggataga-taaaaacttatagtgggaccatgtaatgtatacactttgttttgccgtatcaatttgat |
751 |
Q |
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| T |
29259917 |
taataaacatacggtggatagattaaaaacttatagtgggaccatgtaatgcatacactttgttttgccgtatcaatttgat |
29259998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 392 - 436
Target Start/End: Original strand, 29259673 - 29259717
Alignment:
| Q |
392 |
gcaatttacgttttccttcattaaagtaatccaagtttagcttat |
436 |
Q |
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| T |
29259673 |
gcaatttacgttttccttcattaaagtaatccaagtttagcttat |
29259717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 29261264 - 29261230
Alignment:
| Q |
197 |
caaaaggaagaagaacaagaaacgcatgcatatat |
231 |
Q |
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| T |
29261264 |
caaaagaaagaagaacaagaaacgcatgcatatat |
29261230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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