View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11794_low_5 (Length: 705)
Name: NF11794_low_5
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 627; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 1 - 694
Target Start/End: Original strand, 10193841 - 10194538
Alignment:
| Q |
1 |
tgacagtagtaggcctttgattcaaaatgtttggagttagaaagaaacggaagagctgcactaatggaaataggccagacgttttagttgtgcccataac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10193841 |
tgacagtagtaggcctttgattcaaaatgtttggagttagaaagaaaaggaagagctgaactaatggaaataggccagaagttttagttgtgcccataac |
10193940 |
T |
|
| Q |
101 |
caatagctgggggattgttggtgacagttaggtgttagttacatatatgatggaaataagtcaataaaagtaagcagtgagggaacttgaggaattgtaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10193941 |
caatagctgggggattgttggtgacagttaggtgttagttacatatatgatggaaataagtcaataaaagtaagcagtgagggaacttgaggaattgtaa |
10194040 |
T |
|
| Q |
201 |
cagatctagggaagtttatcccttatcttttcagtaatagaattcaatttactttactgtcatgatatgtgttctataaccttataccagtagtacataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10194041 |
cagatctagggaagtttatcccttatcttttcagtaatagaattcaatttactttactgtcatgatatgtgttctataaccttataccagtagtacataa |
10194140 |
T |
|
| Q |
301 |
tctggtattgcaatttgtcataaactgcatcgcatcaattgcattcactgcaacatggaacttatcaaaattttctgtccctaacaccattccaggcatc |
400 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10194141 |
tctggtattgcaatttgtcataaact-----gaatcaattgcattcactgcaacatggaacttatcaaaattttctgtccctaacaccattccaggcatc |
10194235 |
T |
|
| Q |
401 |
ctgatatcaggatcaaggaattcgaactcatctgttactgaacatgccgcctaacagtgtttgatcataaatcgcaaattataattgaca---------a |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10194236 |
ctgatatcaggatcaaggaattcgaactcatctgttactgaacatgcagcctaacagtgtttgatcataaatcgcaaattataattgacaagaaaaacca |
10194335 |
T |
|
| Q |
492 |
gaaaaccctaaaccgtataagtagtgatcggatcttttgcacttcgcttgtctttcatcatatttatctttaaatgcgttacttattcaaaatcgaatgc |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10194336 |
gaaaaccctaaaccgtataagtagtgatcggatcttttgcacttcgcttgtctttcatcatatttatctttaaatgcgttacttattcaaaatagaatgc |
10194435 |
T |
|
| Q |
592 |
tttgtttccaaaactcaagccagcacagctcatctcaatacaatagcttttgattaaaacaccgtttaaatccactaaagctaatcagcaaaatcacagg |
691 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10194436 |
tttgtttccaaaactcaagccagcacagctcatctcaatacaatagcttttgattaaaacaccgtttaaatccactaaagctaatcagcaaaatcacagg |
10194535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 559 - 694
Target Start/End: Complemental strand, 19459304 - 19459169
Alignment:
| Q |
559 |
ctttaaatgcgttacttattcaaaatcgaatgctttgtttccaaaactcaagccagcacagctcatctcaatacaatagcttttgattaaaacaccgttt |
658 |
Q |
| |
|
|||| |||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
19459304 |
ctttgaatgcgttacttgttcaaaatcaaactctttgtttccaaaactcaagccagcacagctcatctcaatacaatagcttttgattaaaatacggttt |
19459205 |
T |
|
| Q |
659 |
aaatccactaaagctaatcagcaaaatcacaggttc |
694 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19459204 |
aaatccactgaagctaatcagcaaaatcacaggttc |
19459169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 19459390 - 19459312
Alignment:
| Q |
1 |
tgacagtagtaggcctttgattcaaaatgtttggagttagaaagaaacggaagagctgcactaatggaaataggccaga |
79 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19459390 |
tgacagtagtaagcctttgattcaaaatgtatggagtaagaaagaaaaggaagagctgcactaatggaaataggccaga |
19459312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University