View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11794_low_8 (Length: 524)
Name: NF11794_low_8
Description: NF11794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11794_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 3e-83; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 207 - 379
Target Start/End: Complemental strand, 28191082 - 28190911
Alignment:
| Q |
207 |
aaaagttagatatttgttaaagaaggaaggtttatagttcttacgtgaacaaatctatttcaattctaaatcctacacacatgaataaatgttggttatt |
306 |
Q |
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| T |
28191082 |
aaaagttagatatttgt-aaagaaggaagggttatagttcttacgtgaacaaatctatttcaattctaaatcctacacacgtgaataaatgttggttatt |
28190984 |
T |
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| Q |
307 |
atttgtcaattagttacaagatatctctttaggagtcaattagttaaaagatgaagatgagtgtgcaatcaat |
379 |
Q |
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| T |
28190983 |
atttgtcaattagttacaagatatctctttaggagtcaattagttaaaagatgaagatgagtgtgcaatcaat |
28190911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 380 - 508
Target Start/End: Complemental strand, 28190885 - 28190756
Alignment:
| Q |
380 |
gcagtggcggagccagtacccttatttaggg-atgcaaacttctaaacttcaattggggagtatatctgaatacacatgtgtgtgggaaaaacttacata |
478 |
Q |
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| T |
28190885 |
gcagtggcggagtcaggaccctggtttaggggatacaaacttctaaacttcaattggggagtatatctgaatacacatgtgtgtgggaaaaacttacata |
28190786 |
T |
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| Q |
479 |
ttcatattaaaatcaaggttatgatagtat |
508 |
Q |
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| T |
28190785 |
ttcatattaaaatcaaggttatgatagtat |
28190756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 28191277 - 28191174
Alignment:
| Q |
18 |
ttgaaccttacagattttggcatgaaacaaagaaacaatctggtaa--tatcatcagatatgaatgtctgcatttgagtattttttgacaaagtctatac |
115 |
Q |
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| T |
28191277 |
ttgaaccttacagattttggcatgaaacaaagaaacaatctggtaacatatcatcagatatgaatgtctgcatttgagtactttttgacaaagtctatac |
28191178 |
T |
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| Q |
116 |
caag |
119 |
Q |
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| T |
28191177 |
caag |
28191174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 502
Target Start/End: Complemental strand, 28190737 - 28190704
Alignment:
| Q |
469 |
aacttacatattcatattaaaatcaaggttatga |
502 |
Q |
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| T |
28190737 |
aacttacatattcatattaacatcaaggttatga |
28190704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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