View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11795_high_1 (Length: 980)
Name: NF11795_high_1
Description: NF11795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11795_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 507 - 978
Target Start/End: Original strand, 38728351 - 38728822
Alignment:
| Q |
507 |
tttcccccactttttatcattatgttataaaccaatatcaaattaattgttcatgttaaaggttggaatatattattgacaaatattttatctaattaag |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38728351 |
tttcccccactttttatcattatgttataaaccaatatcaaattaattgttcatgttaaaggttggaatatattattgacaaatattttatctaattaag |
38728450 |
T |
|
| Q |
607 |
ttacaattaatgagtgactgaatcaatacctgaacttgatagggtggtcttttgctatggttttggatctctcagagattgaattaggattggtgtgaag |
706 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38728451 |
ttacaattaatgagtgacggaatcaatacctgaacttgatagggtgatcttttgcaatggttttggatctctcagagattgaattaggattggtgtgaag |
38728550 |
T |
|
| Q |
707 |
gagaagatattcaaggtcacctttatcaccattgggaccaatatttttgcagccataaccaaaaggagtagaagtaccagcttgaagtttctctgaagag |
806 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38728551 |
gagaagatactcaaggtcacctttatcaccattgggaccaatatttttgcagccataaccaaaaggagtagaagtaccagcttgaagtttctctgtagag |
38728650 |
T |
|
| Q |
807 |
ttttttgagaaaaactctgttccttcattttccaaccttgaaataacctcctttggtataccatgattcaccaccttnnnnnnnccatattcttcgcaag |
906 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38728651 |
ttttttgagaaaaactctgttccttcattttccaaccttgaaataacctcctttggtataccatgattcaccaccttaaaaaaaccatattcttcgcaag |
38728750 |
T |
|
| Q |
907 |
ctttcacaactaattccgacaactctgaccgttccatggaaaggtcaattgtcggaattcccacagcctttg |
978 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38728751 |
ctttcacaactaattccgacaactctgacctttccatggaaaggtcaattgtcggaattcccacggcctttg |
38728822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 20 - 478
Target Start/End: Original strand, 38727872 - 38728318
Alignment:
| Q |
20 |
gtgtagtagaagtcatagtcacgtagccaaatcaaccacgagaaaacaactacatattacatcaagaaggtgaggcaaaatgcatttgttaaactattaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38727872 |
gtgtagtagaagtcatagtcacgtagccaaatcaaccacgagaaaacaactacatattacatcaagaaggtgaggcaaaatgcatttgttagactattaa |
38727971 |
T |
|
| Q |
120 |
ttnnnnnnnntt-catttctggtatgatttggaatataaaggaaaaatgtccctatctaggatacaaagcataaagcattgataatattaaatacttatg |
218 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38727972 |
ttaaaataaatttcatttctggtatgatttggaatataaaggaaaaatgtccctatctaggatacaaagcataaagcattgataatattaaatacttatg |
38728071 |
T |
|
| Q |
219 |
tccttccttcacagttctttttgttatatcaacctttttcattccaaccttttgaaatgttaccgcaatatggaa-taaaaaatgatgcatcaaccaccc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38728072 |
tccttccttcacagttctttttgttatatcaacctttt---------------gaaatgttaccgcaatatggaaataaaaaatgatgcatcaaccaccc |
38728156 |
T |
|
| Q |
318 |
aaatatagaatatcaatgttttgtcaaactcgtcagagtctgtactctggctatcccc-caccagcctgcttgacacttaagaaacactaactgataaca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38728157 |
aaatatagaatatcaatgttttgtcaaactcgtcagagtctgtactctggctatccccccaccagcctgcttgacacttaagaaacactaactgataaca |
38728256 |
T |
|
| Q |
417 |
ccttgttccctaccttatatattacttcatatattataatcctaaagtcccctcaatctccg |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38728257 |
ccttgttccctaccttatatattacttcatatattataatcctaaagtcccctcaatctccg |
38728318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 17 - 335
Target Start/End: Original strand, 4826281 - 4826600
Alignment:
| Q |
17 |
aaggtgtagtagaagtcatagtcacgtagccaaatcaaccacgagaaaacaactacatattacatcaagaaggtgaggcaaaatgcatttgttaaactat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4826281 |
aaggtgtagtagaagtcatagtcacgtagccaaattaaccacgagaaaacaactacatattacatcaagaaggtgaggcaaaatgcatttgttaaactat |
4826380 |
T |
|
| Q |
117 |
taattnnnnnnnntt-catttctggtatgatttggaatataaaggaaaaatgtccctatctaggatacaaagcataaagcattgataatattaaatactt |
215 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4826381 |
taattaaaataaatttcatttctggtatgatttggaatataaaggaaaaatgtccctatctaggatacaaagcataaagcattgataatattaaatactt |
4826480 |
T |
|
| Q |
216 |
atgtccttccttcacagttctttttgttatatcaacctttttcattccaaccttttgaaatgttaccgcaatatggaataaaaaatgatgcatcaaccac |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4826481 |
atgtccttccttcacagttctttttgttatatcaacctttttcattcgaaccttttgaaatgttaccgcaatatggaataaaaaatgatgcatcaaccac |
4826580 |
T |
|
| Q |
316 |
ccaaatatagaatatcaatg |
335 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4826581 |
ccaaatatagaatatcaatg |
4826600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University