View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11795_high_7 (Length: 378)
Name: NF11795_high_7
Description: NF11795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11795_high_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 378
Target Start/End: Original strand, 4204060 - 4204419
Alignment:
| Q |
19 |
acatgatcgttgtacttgttcgatacacggagagaacgagcaaaatgtgccatcttgtttaagcatttttgcagctgaaggaatagccaaccaaggttga |
118 |
Q |
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| T |
4204060 |
acatgatcgttgtacttgttcgatacacggagagaacgagcaaaatgtgccatcttgtttaagcatttttgcagctgaaggaatagccaaccaaggttga |
4204159 |
T |
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| Q |
119 |
ggtagatccaaaaatacagaatcagccaagtcattaaattcatcaggaaatccctcaccctgaatgtccctaactccacaactgattaaactgcttaaac |
218 |
Q |
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| T |
4204160 |
ggtagatccaaaaatacagaatcagccaattcatttaattcatcaggaaatccctcaccctgaatgtccctaactccacaactgattaaactgcttaaac |
4204259 |
T |
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| Q |
219 |
ctattctctcaaaatcatccctgcaaataattaacaaattaagtaagcttatgatttacataatgattcaactttctacctaaccctacataacccttgt |
318 |
Q |
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| T |
4204260 |
ctattctctcaaaatcatccctgcaaataattaacaaattaagtaagcttatgatttacttaatgattcaactttctacctaaccctacataacccttgt |
4204359 |
T |
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| Q |
319 |
cacttggaaaaaagtaatgtagaaagtgtaattataaactagtttcaagatatttttctt |
378 |
Q |
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| T |
4204360 |
cacttggaaaaaagtaatgtagaaagtgtaattataaactagtttcaagatatttttctt |
4204419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 17243737 - 17243516
Alignment:
| Q |
19 |
acatgatcgttgtacttgttcgatacacggagagaacgagcaaaatgtgccatcttgtttaagcatttttgcagctgaaggaatagccaaccaaggttga |
118 |
Q |
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||||||||||||||||||||| ||||| || ||||| || || || ||||| || ||| | |||||||||||||||||||||||| | |||||||||| |
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| T |
17243737 |
acatgatcgttgtacttgttcaatacagggggagaaagaacataaagtgccgtcatgtcgtaacatttttgcagctgaaggaatagctagccaaggttga |
17243638 |
T |
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| Q |
119 |
ggtagatccaaaaatacagaatcagccaagtcattaaattcatcaggaaatccctcaccctgaatgtccctaactccacaactgattaaactgcttaaac |
218 |
Q |
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|| ||||||||||| || | |||||||||| || |||||| |||||||||||||| || ||||||||||| ||||| | ||| ||| ||||||| || |
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| T |
17243637 |
ggcagatccaaaaaaactgcatcagccaagccagcaaattcttcaggaaatccctcgccttgaatgtccctcactcctgcagtgactaagctgcttatac |
17243538 |
T |
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| Q |
219 |
ctattctctcaaaatcatccct |
240 |
Q |
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| T |
17243537 |
caatcttctcaaagtcatccct |
17243516 |
T |
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