View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11795_high_8 (Length: 305)
Name: NF11795_high_8
Description: NF11795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11795_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 2596584 - 2596859
Alignment:
| Q |
16 |
atgaactgatttgatattctgagcataagatccatgaaattccaatgacaacaatgaaaatgtcatcaaaatgagagtgtaaaatgattccatgagacaa |
115 |
Q |
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| T |
2596584 |
atgaactgatttgatattctgagcataagatccatgaaattccaatgacaacaatgaaaatgtcatcaaaatgagagtgtaaaatgattccatgagacaa |
2596683 |
T |
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| Q |
116 |
ggnnnnnnntaggaccaaagctttaaaagaatcaatgtgtcataacttaaaaaggaaaggcttgatttcttttcctaaggaatgattttgtagtgttaat |
215 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2596684 |
ggaaaaaaataggaccaaagctttaaaagaatcaatgtgtcataacttaaaaaggaaaggcttgatttcttttcctaaggaatgattttgtagtgttaat |
2596783 |
T |
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| Q |
216 |
agatgaggaaggttagggtatagccttagtacacagactagatcaaggagatgaaaagggtaaaacaaagtagttgtt |
293 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2596784 |
agatgagaaaggttaggg--tagccttagtacacagactagatcaaggagatgaaaagggtaaaacaaagtagttgtt |
2596859 |
T |
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