View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11795_low_13 (Length: 230)
Name: NF11795_low_13
Description: NF11795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11795_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 31939602 - 31939800
Alignment:
| Q |
14 |
ggagaagaacctagaaatggaataacttgggattgagaaaatgcataatcataaatgaaaaagaaaacaattgaaataaggactgccacttgcacaacaa |
113 |
Q |
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| T |
31939602 |
ggagaagaacctagaaatggaataacttgggattgagaaaatgcataatcataaatgaaaaagaaaacaattgaaataaggactgccacttgcacaacaa |
31939701 |
T |
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| Q |
114 |
gtccaaacaaagaacatggtcagatgagtttaattgaaaaaatgctaacatgataatcctgaggtcaataacatttcttatatacaacattgttttaaa |
212 |
Q |
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| T |
31939702 |
gtccaaacaaagaacatggtcagatgagtttaattgaaaaaatgctaacatgataatcctgagttcaataacatttcttatatacaacattgttttaaa |
31939800 |
T |
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Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 1337789 - 1337987
Alignment:
| Q |
14 |
ggagaagaacctagaaatggaataacttgggattgagaaaatgcataatcataaatgaaaaagaaaacaattgaaataaggactgccacttgcacaacaa |
113 |
Q |
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|||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| ||| |||||| | ||||| |
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| T |
1337789 |
ggagaagagcctagaaatgaaataacttaggattgagaaaatgcataatcataaatgaaaaagaaaacgatcgaaataagtacttccacttatataacaa |
1337888 |
T |
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| Q |
114 |
gtccaaacaaagaacatggtcagatgagtttaattgaaaaaatgctaacatgataatcctgaggtcaataacatttcttatatacaacattgttttaaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| |||| ||||||||||| | |||||||||||||||||| |
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| T |
1337889 |
gtccaaacaaagaacatggtcagatgagtttaattgaaaaaatgctagcatgctcatcctaaggttgataacatttctcaaatacaacattgttttaaa |
1337987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 9389975 - 9390153
Alignment:
| Q |
14 |
ggagaagaacctagaaatggaataacttgggattgagaaaatgcataatcataaatgaaaaagaaaacaattgaaataaggactgccacttgcacaacaa |
113 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |||||||| |||| |
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| T |
9389975 |
ggagaagaacctggaaatggaataacatgggattgagaaaatgcagaatcagaaatgaaaaagaaaaaaattgaaa--------------------acaa |
9390054 |
T |
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| Q |
114 |
gtccaaacaaagaacatggtcagatgagtttaattgaaaaaatgctaacatgataatcctgaggtcaataacatttcttatatacaacattgttttaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
9390055 |
gtccaaacaaagaacatggtcagatgagtttaattgaaaaaatgctaacatgataatcctgaggtcaataacatttttcatatacaacattgttttaaa |
9390153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 5639796 - 5639857
Alignment:
| Q |
112 |
aagtccaaacaaagaacatggtcagatgagtttaattgaaaaaatgctaacatgataatcct |
173 |
Q |
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|||| ||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5639796 |
aagttcaagcaaggaacatggccagatgagtttaattgaaaaaatgctaacatgataatcct |
5639857 |
T |
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