View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11795_low_2 (Length: 801)

Name: NF11795_low_2
Description: NF11795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11795_low_2
NF11795_low_2
[»] chr2 (6 HSPs)
chr2 (440-784)||(28593559-28593903)
chr2 (440-634)||(28587983-28588178)
chr2 (531-664)||(13872812-13872944)
chr2 (531-664)||(14012937-14013069)
chr2 (357-410)||(28593200-28593253)
chr2 (318-352)||(28589834-28589868)
[»] chr8 (4 HSPs)
chr8 (532-666)||(9824687-9824821)
chr8 (620-665)||(16843896-16843941)
chr8 (548-641)||(27290193-27290286)
chr8 (501-590)||(18354108-18354198)
[»] chr6 (1 HSPs)
chr6 (530-664)||(31169311-31169444)
[»] chr4 (3 HSPs)
chr4 (600-666)||(4394453-4394519)
chr4 (600-666)||(29067684-29067750)
chr4 (440-497)||(27990947-27991004)
[»] chr1 (2 HSPs)
chr1 (600-649)||(10228976-10229025)
chr1 (597-666)||(28224305-28224374)


Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 440 - 784
Target Start/End: Original strand, 28593559 - 28593903
Alignment:
Q  440 tcaatattatactttgttattttaaggtttaggaataagtgaaaaatatctatattaaatatttgtttttaaaa-ttccttgcaccaacggggttgagtc 538  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28593559 tcaatattatactttgttattttaaggtttaggaataagtgaaaaatatctatattaaatatttgtttttaaaaattccttgcaccaacggggttgagtc 28593658  T
Q  539 taacgaaaggagttaaactctcacaatctaatgaatcaacgttcaaatattgactaggagagatactcatatttagcgtttgatatgcctcaaataacat 638  Q
    ||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  28593659 taacggaaggagttaaattctcacaatcttat-aatcaacgttcaaatattgactaggagagatactcatatttagcgttcgacatgcctcaaataacat 28593757  T
Q  639 tacacgtttaatgttcttaatttttatgaatacgatgttctctttttattctattattttttacggatacaaagagagaatgataaggttatcccacaat 738  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||| |||||||| |||||||||    
T  28593758 tacaagtttaatgttcttaatttttatgaatacgatgttctctttttattctattattttttacagataaaaagagaaaataataaggttgtcccacaat 28593857  T
Q  739 gatggtacaaatatcaattctctatagaaaatgtttccgtgctaat 784  Q
    ||| | ||||||||||||||||||||||||||||||||||||||||    
T  28593858 gattgcacaaatatcaattctctatagaaaatgtttccgtgctaat 28593903  T

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Target: chr2; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 440 - 634
Target Start/End: Original strand, 28587983 - 28588178
Alignment:
Q  440 tcaatattatactttgttattttaaggtttaggaataagtgaaaaatatctatattaaatatttgtttttaaaa-ttccttgcaccaacggggttgagtc 538  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||    
T  28587983 tcaatattatactttgttattttaaggtttaggaataagtgaaaaatatctataaaaaatatttgtttttaaaaattccttgcaccaacggggttgagtc 28588082  T
Q  539 taacgaaaggagttaaactctcacaatctaatgaatcaacgttcaaatattgactaggagagatactcatatttagcgtttgatatgcctcaaata 634  Q
     |||| |||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| || ||||||||||||    
T  28588083 caacggaaggagttaaactctcgcaatctaatgaatcaacgctcaaatattgcctaggagagatactcatatttagcgttcgacatgcctcaaata 28588178  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 664
Target Start/End: Complemental strand, 13872944 - 13872812
Alignment:
Q  531 gttgagtctaacgaaaggagttaaactctcacaatctaatgaatcaacgttcaaatattgactaggagagatactcatatttagcgtttgatatgcctca 630  Q
    |||| |||||||||||||||||||||| ||||||  ||| |||||||  || | ||||||| | | || ||||||||||||||  || ||| || |||||    
T  13872944 gttgtgtctaacgaaaggagttaaactttcacaacttaacgaatcaatatt-atatattgattggaagtgatactcatatttaatgtctgagattcctca 13872846  T
Q  631 aataacattacacgtttaatgttcttaattttta 664  Q
    ||||| |||| || | || |||| ||||||||||    
T  13872845 aataaaattatacatatagtgttattaattttta 13872812  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 664
Target Start/End: Complemental strand, 14013069 - 14012937
Alignment:
Q  531 gttgagtctaacgaaaggagttaaactctcacaatctaatgaatcaacgttcaaatattgactaggagagatactcatatttagcgtttgatatgcctca 630  Q
    |||| |||||||||||||||||||||| ||||||  ||| |||||||  || | ||||||| | | || ||||||||||||||  || ||| || |||||    
T  14013069 gttgtgtctaacgaaaggagttaaactttcacaacttaacgaatcaatatt-atatattgattggaagtgatactcatatttaatgtctgagattcctca 14012971  T
Q  631 aataacattacacgtttaatgttcttaattttta 664  Q
    ||||| |||| || | || |||| ||||||||||    
T  14012970 aataaaattatacatatagtgttattaattttta 14012937  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 357 - 410
Target Start/End: Original strand, 28593200 - 28593253
Alignment:
Q  357 tggtagtccatcagttctcgataaatttgatcatgattacaccatgcatttata 410  Q
    |||||||| |||  |||||||||||||| |||||||||||||||||| ||||||    
T  28593200 tggtagtctatcgattctcgataaatttcatcatgattacaccatgcttttata 28593253  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 352
Target Start/End: Original strand, 28589834 - 28589868
Alignment:
Q  318 ccactggtagtcaatccctttatccaaaatagatg 352  Q
    |||||||||||||||||||||| ||||||||||||    
T  28589834 ccactggtagtcaatccctttacccaaaatagatg 28589868  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 532 - 666
Target Start/End: Complemental strand, 9824821 - 9824687
Alignment:
Q  532 ttgagtctaacgaaaggagttaaactctcacaatctaatgaatcaacgttcaaatattgactaggagagatactcatatttagcgtttgatatgcctcaa 631  Q
    |||||||||||  ||| ||||| |||||||||| || | ||||||| ||| |||  ||||||||||| |||||  |||||||| |||||| || ||||||    
T  9824821 ttgagtctaacagaagaagttatactctcacaacctcacgaatcaatgtttaaactttgactaggagtgatacctatatttagtgtttgacatacctcaa 9824722  T
Q  632 ataacattacacgtttaatgttcttaatttttatg 666  Q
    |||  ||||||  ||||  ||| ||||||||||||    
T  9824721 atataattacagatttatagtttttaatttttatg 9824687  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 620 - 665
Target Start/End: Original strand, 16843896 - 16843941
Alignment:
Q  620 gatatgcctcaaataacattacacgtttaatgttcttaatttttat 665  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||    
T  16843896 gatatgcctcaaataaaattacacatttaatgttcttaatttttat 16843941  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 641
Target Start/End: Original strand, 27290193 - 27290286
Alignment:
Q  548 gagttaaactctcacaatctaatgaatcaacgttcaaatattgactaggagagatactcatatttagcgtttgatatgcctcaaataacattac 641  Q
    |||||||| |||||| | || |||||||||  || ||||||| ||| |||| |||||| |||||||| || ||| ||||||||||||| |||||    
T  27290193 gagttaaattctcaccacctgatgaatcaatatttaaatatttacttggagtgatacttatatttagtgtctgacatgcctcaaataaaattac 27290286  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 501 - 590
Target Start/End: Complemental strand, 18354198 - 18354108
Alignment:
Q  501 tttgtttttaaaat-tccttgcaccaacggggttgagtctaacgaaaggagttaaactctcacaatctaatgaatcaacgttcaaatattg 590  Q
    |||||||||||||  | ||||||| |||| |||||| |||||   ||||||||| ||||||||||||| ||| |||||| ||| |||||||    
T  18354198 tttgtttttaaaaagttcttgcacaaacgaggttgattctaatagaaggagttagactctcacaatctgatgcatcaacattcgaatattg 18354108  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 530 - 664
Target Start/End: Original strand, 31169311 - 31169444
Alignment:
Q  530 ggttgagtctaacgaaaggagttaaactctcacaatctaatgaatcaacgttcaaata-ttgactaggagagatactcatatttagcgtttgatatgcct 628  Q
    ||||||||||||||||||||||||||||||| || | | |||||||||  || ||||| |||| | |||   ||| |||||||||  || | | ||||||    
T  31169311 ggttgagtctaacgaaaggagttaaactctcgcagtttgatgaatcaatattaaaatatttgattgggaataatattcatattta--gtgtcacatgcct 31169408  T
Q  629 caaataacattacacgtttaatgttcttaattttta 664  Q
    ||||||| |||| || |||| |||||||||||||||    
T  31169409 caaataaaattatacatttagtgttcttaattttta 31169444  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 600 - 666
Target Start/End: Original strand, 4394453 - 4394519
Alignment:
Q  600 gatactcatatttagcgtttgatatgcctcaaataacattacacgtttaatgttcttaatttttatg 666  Q
    ||||||||||||||  |||| | ||| |||||| || ||||||| ||||||| ||||||||||||||    
T  4394453 gatactcatatttaatgtttaacatgtctcaaacaaaattacacatttaatggtcttaatttttatg 4394519  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 600 - 666
Target Start/End: Complemental strand, 29067750 - 29067684
Alignment:
Q  600 gatactcatatttagcgtttgatatgcctcaaataacattacacgtttaatgttcttaatttttatg 666  Q
    |||| |||||||||| |||||| || |||||||||| |  |||| ||||| ||||||||||||||||    
T  29067750 gataatcatatttagtgtttgacatacctcaaataaaaccacacatttaaagttcttaatttttatg 29067684  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 440 - 497
Target Start/End: Complemental strand, 27991004 - 27990947
Alignment:
Q  440 tcaatattatactttgttattttaaggtttaggaataagtgaaaaatatctatattaa 497  Q
    |||||||||||||| | ||||| |||||||| |||||||| || ||| ||||||||||    
T  27991004 tcaatattatacttggctatttcaaggtttaagaataagtaaataatgtctatattaa 27990947  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 649
Target Start/End: Complemental strand, 10229025 - 10228976
Alignment:
Q  600 gatactcatatttagcgtttgatatgcctcaaataacattacacgtttaa 649  Q
    ||||||||||||||| |||| | ||||||||||||| ||||||| |||||    
T  10229025 gatactcatatttagtgtttcacatgcctcaaataaaattacacatttaa 10228976  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 666
Target Start/End: Complemental strand, 28224374 - 28224305
Alignment:
Q  597 agagatactcatatttagcgtttgatatgcctcaaataacattacacgtttaatgttcttaatttttatg 666  Q
    ||||||||||||||| || ||| || ||| ||||||||| ||||||| |||||  | |||||||||||||    
T  28224374 agagatactcatattgagtgttcgacatgtctcaaataaaattacacatttaagatacttaatttttatg 28224305  T

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