View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11795_low_3 (Length: 696)
Name: NF11795_low_3
Description: NF11795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11795_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 569; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 19 - 686
Target Start/End: Original strand, 3081806 - 3082476
Alignment:
| Q |
19 |
gatagatgtgtagctcaactggtctagtgcctgtctctccttgaatgggttgcaaggtcgtannnnnnnn-ccatgagtggtgcaacgtacaattaatgt |
117 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3081806 |
gatagatgtgtagctcaactggtctagtacctgtctctccttgaatgggttgcaaggtcgtatttttttttccatgagtggtgcaacgtacaattaatgt |
3081905 |
T |
|
| Q |
118 |
ctcccctaataaaaaagatttcattttaatatttgctttcactcttaaaatatgtagaacttaccatgataatatcagcatgtgaagctgatgtatattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3081906 |
ctcccctaataaaaaagatttcattttaatatttgctttcactcttaaaatatgtagaacttaccatgataatatcagcatgtgaagctgatgtatattt |
3082005 |
T |
|
| Q |
218 |
tctcaaagtaatttactattccccaccaaaataaagaggtttatttcaaaaagcttagtggcggaagagagatattgcaagtttgaaccctaacccacgt |
317 |
Q |
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| T |
3082006 |
tctcaaagtaatttactattccccaccaaaataaagaggtttatttcaaaaagcttagtggcggaagagagatattgcaagtttgaaccctaacccacgt |
3082105 |
T |
|
| Q |
318 |
agtaaatatccctgcaatattttactatatgaactacgagacagacaaaccaaccctattttaatcaacctatagaaaattacctaacgttttattttat |
417 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3082106 |
agtaaatatcccttccatattttactatatgaactacgagacaaacaaaccaaccctattttaatcaacctatagaaaattacctaaggttttattttat |
3082205 |
T |
|
| Q |
418 |
ttaccaataagtaaatgttgctagcaattggaaaaggtgtaaaact--nnnnnnnnntcatgattatatacagatacaggtagaaaatacagttttatgc |
515 |
Q |
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| T |
3082206 |
ttaccaataagtaaatgttgctagcaattggaaaaggtgtaaaactaataaaaaaaatcatgattatatacagatacaggtagaaaatacagttttatgc |
3082305 |
T |
|
| Q |
516 |
aagatgcaacttcagcaccaatcatatccttctatgattacatcataattggtggtggcactgcagggtgtcctttggctgcaacactgtcccaaaatca |
615 |
Q |
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| T |
3082306 |
aagatgcaacttcagcaccaatcatatcctactatgattacatcatagttggtggtggcaccgcagggtgtcctttggctgcaacactgtcccaaaatca |
3082405 |
T |
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| Q |
616 |
tagggttttggtgcttgaacgtggtggatcaccttatgggaatccaaacataaccaatttaagtgcctatg |
686 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3082406 |
tagggttttggtgcttgaacgtggtggatcaccttatgggaatccaaacataaccaatttaagtgcctatg |
3082476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 361 - 683
Target Start/End: Original strand, 3090505 - 3090829
Alignment:
| Q |
361 |
gacaaaccaaccctattttaatcaacctatagaaaattacctaacgttttattttatttaccaataagtaaatgttgctagcaattggaaaaggtgtaaa |
460 |
Q |
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|||||||||| | ||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3090505 |
gacaaaccaaacatatattaatcaacctatagaacattacctagggttttattttatttaccaataaataaatgttgctagcaattggaaaaggtgtaaa |
3090604 |
T |
|
| Q |
461 |
actnnnnnnnnn--tcatgattatatacagatacaggtagaaaatacagttttatgcaagatgcaacttcagcaccaatcatatccttctatgattacat |
558 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3090605 |
actaataaaaaaaatcatgattatatacagatacaggtagaaaatacagttttatgcaagatgcaacttcagcaccaatcatatccttctatgattacat |
3090704 |
T |
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| Q |
559 |
cataattggtggtggcactgcagggtgtcctttggctgcaacactgtcccaaaatcatagggttttggtgcttgaacgtggtggatcaccttatgggaat |
658 |
Q |
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| T |
3090705 |
cataattggtggtggcactgcagggtgtcctttggctgcaacactgtccaaaaatcatagggttttggtgcttgaacgtggtggatcaccttatgggaat |
3090804 |
T |
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| Q |
659 |
ccaaacataaccaatttaagtgcct |
683 |
Q |
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||||||||||||||||||||||||| |
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| T |
3090805 |
ccaaacataaccaatttaagtgcct |
3090829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 601
Target Start/End: Original strand, 5499448 - 5499501
Alignment:
| Q |
548 |
tatgattacatcataattggtggtggcactgcagggtgtcctttggctgcaaca |
601 |
Q |
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| T |
5499448 |
tatgattacataatagtgggaggtggaactgcagggtgtcctttagctgcaaca |
5499501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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