View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11795_low_4 (Length: 585)
Name: NF11795_low_4
Description: NF11795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11795_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 30 - 567
Target Start/End: Complemental strand, 2783689 - 2783152
Alignment:
| Q |
30 |
ttcaatttcaaaccgaacaaaaattacggacaactatctcatttcattctcaccggaaccctaacaaatctccggcgaacatcaccgtcgtccatggcgt |
129 |
Q |
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| T |
2783689 |
ttcaatttcaaaccgaacaaaaattacggacaactatctcatttcattctcaccggaaccctaacaaatctccggcgaacattgccgtcgtccatggcgt |
2783590 |
T |
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| Q |
130 |
tcttctccaccgtctccacacaatccctccaccaacactgaacttcccttcctcctcttccgttcaccggaaatggcaaatgcgccaccgtccggtaacc |
229 |
Q |
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| T |
2783589 |
tcttctccaccgtctccacacaatccctccaccaacactgaacttcccttcctcctattccgttcaccggaaatggcaaatgcgccaccgtccggtaacc |
2783490 |
T |
|
| Q |
230 |
ttactccggtctcgttaatctgttgaagcgatcgtaactaaccgtccgtcaatcccggagagattgttagggcggttatggcgaagggaggacaatgctt |
329 |
Q |
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| T |
2783489 |
ttactccggtctcgttaatctgttgaagcgatcgtaactaaccgtccgtcaatcccggagagattgttagggcggttatggcgaagggaggacaatgctt |
2783390 |
T |
|
| Q |
330 |
gttggagaagctttggaggtgtattcgaacggttttctttgttgttgcattggtggtttcgcttattgttacgtcgcttccggtggttgttgcggtggtt |
429 |
Q |
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| T |
2783389 |
gttggagaagctttggaggtgtattcgaacggttttctttgttgttgcattggtggtttcgctgattgttacgtcgcttccggtggttgttgcggtggtt |
2783290 |
T |
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| Q |
430 |
gatgttcttgttccgtgtgttttgatctccaattttacttgtgttaattgctatagtttcaaacagcttcttcgtcgttactctttcaagagttctttga |
529 |
Q |
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| T |
2783289 |
gatgttcttgttccgtgtgttttgatctccaattttacttgtgttaattgctatagtttcaaacagcttcttcgtcgttactctttcaagagttctttga |
2783190 |
T |
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| Q |
530 |
tggacattcctcttgtttcagtcttaagatcattcatc |
567 |
Q |
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| T |
2783189 |
tggacattcctcttgtttcagtcttaagatcattcatc |
2783152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 334 - 548
Target Start/End: Original strand, 44291628 - 44291842
Alignment:
| Q |
334 |
gagaagctttggaggtgtattcgaacggttttctttgttgttgcattggtggtttcgcttattgttacgtcgcttccggtggttgttgcggtggttgatg |
433 |
Q |
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| T |
44291628 |
gagaagcttcggaggtgtattcggacggtttttttcgtggcggcattggtggcgtcgttggtggtgacgtcattgccggtggttgtggccgttgttgatg |
44291727 |
T |
|
| Q |
434 |
ttcttgttccgtgtgttttgatctccaattttacttgtgttaattgctatagtttcaaacagcttcttcgtcgttactctttcaagagttctttgatgga |
533 |
Q |
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| T |
44291728 |
tgcttgttccttgcgttttgatttcgaggttcacgtgtgtcaggtgttatggtttcaaggagcatttgagtcgttactcttttaagagttccttgacgga |
44291827 |
T |
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| Q |
534 |
cattcctcttgtttc |
548 |
Q |
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|||||||||||||| |
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| T |
44291828 |
tattcctcttgtttc |
44291842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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