View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11795_low_6 (Length: 472)
Name: NF11795_low_6
Description: NF11795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11795_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 2339357 - 2339109
Alignment:
| Q |
1 |
tcagtaaagacactatcaggagaagcaactccactcattgatggggtcttgggaaaggaattagatccccgttttgcagctaggtgtgcctgttgttgcg |
100 |
Q |
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| T |
2339357 |
tcagtaaaaacactatcaggagaagcaactccactcattgatggggtcttgggaaaggaattagatccccgttttgcagctaggtgtgcctgttgttgcc |
2339258 |
T |
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| Q |
101 |
tttgtgtagaatcattagcaatataagtcaaagatggagttccaacagctgcggcatgagaagccattggtgccttctccttttgtaatgctccaggtgt |
200 |
Q |
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| T |
2339257 |
tttgagtagaatcattagcaatataagtcaaagatggagttccaacagcagcagtacgtgaagccattgctgccttctctttttgtaatgctcctgatgc |
2339158 |
T |
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| Q |
201 |
aattttcattgaagaccgtctaaaatttggtccagctgaaccatcagaa |
249 |
Q |
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| T |
2339157 |
attgttcactgaagatggtccaaaacttggtccaactgaaccattagaa |
2339109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 294 - 456
Target Start/End: Complemental strand, 7749158 - 7748994
Alignment:
| Q |
294 |
ctgaagatgatcctccttttttgcttctttcatgatttgctggcccagacaatttgaggttgtctg--ggaaattaggtctcatcaatgcatgctgtagc |
391 |
Q |
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| T |
7749158 |
ctgaagctgatcctcctttttggcttctttctcgatttgctggcccagactattccaggttgtctgtgggaaattagatctcatgaatgcatgttgtggc |
7749059 |
T |
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| Q |
392 |
attctttgttgaatccgcaattgttgtgggtctaaatttcttgcatacatttccacctcactttt |
456 |
Q |
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| T |
7749058 |
attctttgctgaagccgtaattgttgtgggtctaaattgcttgcatccatttccaactcactttt |
7748994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 7749463 - 7749357
Alignment:
| Q |
10 |
acactatcaggagaagcaactccactcattgatggggtcttgggaaaggaattagatccccgttttgcagctaggtgtgcctgttgttgcgtttgtgtag |
109 |
Q |
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|||||| |||||||||||||||||||||||| || |||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7749463 |
acactagcaggagaagcaactccactcattgcaggtgtcttgggaagggaattagatctccgttttgcagctaggtgtgcctgttgttgcctttgtgtag |
7749364 |
T |
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| Q |
110 |
aatcatt |
116 |
Q |
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||||||| |
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| T |
7749363 |
aatcatt |
7749357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 44915680 - 44915584
Alignment:
| Q |
10 |
acactatcaggagaagcaactccactcattgatggggtcttgggaaaggaattaga-tccccgttttgcagctaggtgtgcctgttgttgcgtttgt |
105 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| | || ||||||||||||||||| |||||||||| ||||| |
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| T |
44915680 |
acactatcaggagaagcaactccactcattgttggggtcttgggaagggaattagattatccattttgcagctaggtgtgtctgttgttgcctttgt |
44915584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 429
Target Start/End: Complemental strand, 44915346 - 44915275
Alignment:
| Q |
358 |
tgggaaattaggtctcatcaatgcatgctgtagcattctttgttgaatccgcaattgttgtgggtctaaatt |
429 |
Q |
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| T |
44915346 |
tgggaaattaggtctcatggatgcatgttgtgccattctttgttgaagccgtacttgttgtgggtctaaatt |
44915275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 7749355 - 7749246
Alignment:
| Q |
133 |
gatggagttccaacagctgcggcatgagaagccattggtgccttctccttttgtaatgctccaggtgtaattttcattgaagaccgtctaaaatttggtc |
232 |
Q |
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| T |
7749355 |
gatggagttccaacagcagcagtaagtgaagccattgctgccttctctttctgcaatgctccgggtgcggtgttcattgaagatggtccaaaactgggtc |
7749256 |
T |
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| Q |
233 |
cagctgaacc |
242 |
Q |
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|| ||||||| |
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| T |
7749255 |
caactgaacc |
7749246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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