View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11796_low_1 (Length: 416)
Name: NF11796_low_1
Description: NF11796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11796_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 5917253 - 5916862
Alignment:
| Q |
17 |
agattacctctccaatttttctgcagatgatgatgacatatcaggagaaacgtgaacactgatacaagaagccttgatggaattcaaagctggattaatg |
116 |
Q |
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| T |
5917253 |
agattacctctccaatttttctgcagatgatgatgacatatcaggagaaacgtgaacactgatacaagaagccttgatggaattcaaagctggattaagg |
5917154 |
T |
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| Q |
117 |
actaaaatgaatcaagtatgaaa-tggattctgaattgctgcaagctgatggattaggaatcagattcgcaagctgattaatcaccatatgatcagcttc |
215 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5917153 |
actaaaatgaatcaagtatgaaaatcgattctgaattgctgcaagctgatggattaggaatcagattcgcaagctgattaatcaccatatgatcagcttc |
5917054 |
T |
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| Q |
216 |
cgacgtatatagcataataaagatttgtaagctttctttcaacaaccagttggaccaaaccactttacaaacagtcccatgatgctgatcagtggaagga |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
5917053 |
cgacgtatatagcataataaagatttgtaagctttctttcaacaaccagttggaccaaaccactttacaaacaatcccatgatgctgatcagtgaaagga |
5916954 |
T |
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| Q |
316 |
atttaagttgggaagattagtttacttttcttacccttaccaggaaaagtgtaagttcaaagacaagacattaatgcatgtttccctaccta |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5916953 |
atttaagttgggaagattagtttacttttcttacccttaccaggaaaagtgtaagttcaaagacaagacattaatgcatgtttccctaccta |
5916862 |
T |
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