View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11796_low_4 (Length: 342)
Name: NF11796_low_4
Description: NF11796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11796_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 3423892 - 3424216
Alignment:
| Q |
1 |
atacataaacacttgtatgataagcgcttatttttaagatgttggtccaaacagggcccaagtctaagttgaatcaaatgtatcaatacccctttctatt |
100 |
Q |
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| T |
3423892 |
atacataaacacttgtatgataagcacttatttttaagatgttggtccaaacagggcccaagtctaagttgaatcaaatgtatcaatacccctttctatt |
3423991 |
T |
|
| Q |
101 |
tcttattttgatttccttggttcatcttttacaagatcatcttactttcaacaaataaaagaagatgttcaaaagtacacaaaacacatcatagaattga |
200 |
Q |
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| T |
3423992 |
tcatattttgatttccttggttcatcttttactagatcatcttactttcaacaaatagaagaagatgttcaaaagtacacaaaacacatcatagaattga |
3424091 |
T |
|
| Q |
201 |
gatcttctattaccaatttcaagacaaaggaaatgacagaattgatcaagttccacaaagaagttgaatctgtttttgagaaactaactgatgaatctca |
300 |
Q |
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| T |
3424092 |
gatcttctattaccaatttcaagacaaaggaaatgacagaattgatcaagttccacaaagaagttgaatctgtttttgagaaactaactgatgaatctca |
3424191 |
T |
|
| Q |
301 |
ggttagtttaattgcactacaatct |
325 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
3424192 |
ggttagtttaattgcactacaatct |
3424216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 3 - 325
Target Start/End: Complemental strand, 11917509 - 11917187
Alignment:
| Q |
3 |
acataaacacttgtatgataagcgctta-tttttaagatgttggtccaaacagggcccaagtctaagttgaatcaaatgtatcaatacccctttctattt |
101 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||| | ||||||||||||| |
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| T |
11917509 |
acataaacacttgtatgataagcgcttaatttttaagatgttggtccaaacaggtcccaagactaagttgaatcaaatgtatgac--cccctttctattt |
11917412 |
T |
|
| Q |
102 |
cttatttt-gatttccttggttcatcttttacaagatcatcttactttcaacaaataaaagaagatgttcaaaagtacacaaaacacatcatagaattga |
200 |
Q |
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|||||||| ||||||||||||| | |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11917411 |
cttatttttgatttccttggtttgtattttactagatcatcttactttcaacaaatagaagaagatgttcaaaagtacacaaaacacatcatagaattga |
11917312 |
T |
|
| Q |
201 |
gatcttctattaccaatttcaagacaaaggaaatgacagaattgatcaagttccacaaagaagttgaatctgtttttgagaaactaactgatgaatctca |
300 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| | |
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| T |
11917311 |
gatcttccattaccaatttcaagacaaaggaaatgacagaattgatcaagttccacaaagatgttgaatctgttcttgagaaactaactgatgaatctta |
11917212 |
T |
|
| Q |
301 |
ggttagtttaattgcactacaatct |
325 |
Q |
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||||||||||||||||||||||||| |
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| T |
11917211 |
ggttagtttaattgcactacaatct |
11917187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 134 - 308
Target Start/End: Complemental strand, 35743122 - 35742948
Alignment:
| Q |
134 |
agatcatcttactttcaacaaataaaagaagatgttcaaaagtacacaaaacacatcatagaattgagatcttctattaccaatttcaagacaaaggaaa |
233 |
Q |
| |
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||||| |||||||| ||||||| |||||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||||||||||||||| | |
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| T |
35743122 |
agatcttcttacttcatacaaatagaagaagatgttcaaaagtacacaaaacaaatcatagaactgagatcaagaattactaatttcaagacaaaggaca |
35743023 |
T |
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| Q |
234 |
tgacagaattgatcaagttccacaaagaagttgaatctgtttttgagaaactaactgatgaatctcaggttagtt |
308 |
Q |
| |
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|||| ||||||| ||||||||||||||| ||||||||| || ||||||| |||||||||||||| ||||| |||| |
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| T |
35743022 |
tgaccgaattgagcaagttccacaaagatgttgaatctattcttgagaatctaactgatgaatcacaggtaagtt |
35742948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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