View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11796_low_6 (Length: 293)
Name: NF11796_low_6
Description: NF11796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11796_low_6 |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0640 (1 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 15 - 293
Target Start/End: Original strand, 33323458 - 33323736
Alignment:
| Q |
15 |
ggacatcaattttaggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaagtatctgag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33323458 |
ggacatcaattttaggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaagtatctgag |
33323557 |
T |
|
| Q |
115 |
aagttggaagaacttaaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttaaggctcaataacacggacgga |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
33323558 |
aagttggaagaacttaaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttacagctcaagaacacggacgga |
33323657 |
T |
|
| Q |
215 |
aaggaaatgaggcacaagaataatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgt |
293 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33323658 |
aaggaaatgaggcacaagaagaatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgt |
33323736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 15 - 293
Target Start/End: Original strand, 1041867 - 1042145
Alignment:
| Q |
15 |
ggacatcaattttaggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaagtatctgag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1041867 |
ggacatcaattttaggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaagtatctgag |
1041966 |
T |
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| Q |
115 |
aagttggaagaacttaaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttaaggctcaataacacggacgga |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
1041967 |
aagttggaagaacttaaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttacagctcaagaacacggacgga |
1042066 |
T |
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| Q |
215 |
aaggaaatgaggcacaagaataatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgt |
293 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1042067 |
aaggaaatgaggcacaagaagaatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgt |
1042145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 15 - 293
Target Start/End: Original strand, 41192932 - 41193210
Alignment:
| Q |
15 |
ggacatcaattttaggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaagtatctgag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41192932 |
ggacatcaattttaggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaagtatctgag |
41193031 |
T |
|
| Q |
115 |
aagttggaagaacttaaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttaaggctcaataacacggacgga |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
41193032 |
aagttggaagaacttaaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttacagctcaagaacacggacgga |
41193131 |
T |
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| Q |
215 |
aaggaaatgaggcacaagaataatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgt |
293 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41193132 |
aaggaaatgaggcacaagaagaatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgt |
41193210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 15 - 293
Target Start/End: Original strand, 41200188 - 41200466
Alignment:
| Q |
15 |
ggacatcaattttaggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaagtatctgag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41200188 |
ggacatcaattttaggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaagtatctgag |
41200287 |
T |
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| Q |
115 |
aagttggaagaacttaaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttaaggctcaataacacggacgga |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
41200288 |
aagttggaagaacttaaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttacagctcaagaacacggacgga |
41200387 |
T |
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| Q |
215 |
aaggaaatgaggcacaagaataatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgt |
293 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41200388 |
aaggaaatgaggcacaagaagaatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgt |
41200466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 41407621 - 41407727
Alignment:
| Q |
15 |
ggacatcaattttaggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaagtatctgag |
114 |
Q |
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||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41407621 |
ggacatccattttaggataatgtaagctagcatgatttagttggttgatacctagtctcaaatgttatggaacatttcttcttctgataaagtatctgag |
41407720 |
T |
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| Q |
115 |
aagttgg |
121 |
Q |
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||||||| |
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| T |
41407721 |
aagttgg |
41407727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 3321 - 3216
Alignment:
| Q |
15 |
ggacatcaattttaggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaagtatctgag |
114 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3321 |
ggacatccattttaggataatgtaagctagcatgatttagttggttgatacctagtctcaaatgttatggaacatttcttcttctgataaagtatctgag |
3222 |
T |
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| Q |
115 |
aagttg |
120 |
Q |
| |
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|||||| |
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| T |
3221 |
aagttg |
3216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 23877 - 23772
Alignment:
| Q |
15 |
ggacatcaattttaggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaagtatctgag |
114 |
Q |
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||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23877 |
ggacatccattttaggataatgtaagctagcatgatttagttggttgatacctagtctcaaatgttatggaacatttcttcttctgataaagtatctgag |
23778 |
T |
|
| Q |
115 |
aagttg |
120 |
Q |
| |
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|||||| |
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| T |
23777 |
aagttg |
23772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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