View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11796_low_7 (Length: 253)
Name: NF11796_low_7
Description: NF11796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11796_low_7 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 30853199 - 30853434
Alignment:
| Q |
18 |
cctttctcactgtccattatttccaatatacatttcttcatttcatctcttctcacaatttgtttctcatcaattggaacccttattccaattttccaaa |
117 |
Q |
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| T |
30853199 |
cctttctcactgtccattatttccaatatacatttcttcatttcatctcttctcacaatttgtttctcatcaattggaacccttattccaattttccaaa |
30853298 |
T |
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| Q |
118 |
catcttcaataaactttgcattggtggattgatctgaccattgtggcattgcaacaattggaattcctaagctaatagcttccaatgtggaattccaacc |
217 |
Q |
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| T |
30853299 |
catcttcaataaactttgcattggtggattgatctgaccattgtggcattgcaacaattggaactcctaagctaatagcttccaatgtggaattccaacc |
30853398 |
T |
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| Q |
218 |
acaatgtgttacaaaacaccctatagattcatgtgc |
253 |
Q |
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| T |
30853399 |
acaatgtgttacaaaacaccctatagattcatgtgc |
30853434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 30844723 - 30844946
Alignment:
| Q |
18 |
cctttctcactgtccattatttccaatatacatttcttcatttcatctcttctcacaatttgtttctcatcaattggaacccttattccaattttccaaa |
117 |
Q |
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| T |
30844723 |
cctttctcaccctccattatttccattatacaatccttaaatttatcttgtctcacaatttgtttctcatcaataggagctctaattcccatcttccaaa |
30844822 |
T |
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| Q |
118 |
catcttcaataaactttgcattggtggattgatctgaccattgtggcattgcaacaattggaattcctaagctaatagcttccaatgtggaattccaacc |
217 |
Q |
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| T |
30844823 |
catcagcaataaattttgcattggttctttggtctgaccattgtggtattgcaatagttggaacccctaagcttaatgcttccaatgtggagttccatcc |
30844922 |
T |
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| Q |
218 |
acaatgtgttacaaaacaccctat |
241 |
Q |
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| T |
30844923 |
acaatgtgttacaaaacaccctat |
30844946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 30840214 - 30840437
Alignment:
| Q |
18 |
cctttctcactgtccattatttccaatatacatttcttcatttcatctcttctcacaatttgtttctcatcaattggaacccttattccaattttccaaa |
117 |
Q |
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|||||||||| | |||||||||||||||||| | ||| | || |||| ||||||||||||||||||||||| ||| | || ||||| || ||||||| |
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| T |
30840214 |
cctttctcacccttcattatttccaatatacaatccttaaatttatcttgcctcacaatttgtttctcatcaataggagctctaattcccatcttccaaa |
30840313 |
T |
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| Q |
118 |
catcttcaataaactttgcattggtggattgatctgaccattgtggcattgcaacaattggaattcctaagctaatagcttccaatgtggaattccaacc |
217 |
Q |
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|||| ||||||| ||||||||||| ||| |||||||||||||| ||||||| | |||||| |||||||| | |||||||||||||| ||||| || |
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| T |
30840314 |
catcagcaataaattttgcattggttctttggtctgaccattgtggtattgcaatagttggaacccctaagcttaatgcttccaatgtggagttccatcc |
30840413 |
T |
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| Q |
218 |
acaatgtgttacaaaacaccctat |
241 |
Q |
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| T |
30840414 |
acaatgtgttacaaaacaccctat |
30840437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 30858483 - 30858703
Alignment:
| Q |
30 |
tccattatttccaatatacatttcttcatttcatctcttctcacaatttgtttctcatcaattggaacccttattccaattttccaaacatcttcaataa |
129 |
Q |
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||||||||||| ||||||| ||||||| | |||| ||||||| |||||||||||||||| | | || ||||| | ||||||||||||| ||| || |
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| T |
30858483 |
tccattatttcacatatacaattcttcaatgtatcttttctcactatttgtttctcatcaaataaagttctaattcctactttccaaacatctgcaacaa |
30858582 |
T |
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| Q |
130 |
actttgcattggtggattgatctgaccattgtggcattgcaacaattggaattcctaagctaatagcttccaatgtggaattccaaccacaatgtgttac |
229 |
Q |
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| T |
30858583 |
actttgcgtcaatgccttggtctgaatcaagtggcattgcaacaattggaactcctatactcaaagcttccaatgtggaattccaaccacaatgtgttac |
30858682 |
T |
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| Q |
230 |
aaaacaccctatagattcatg |
250 |
Q |
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|||||||||||| | |||||| |
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| T |
30858683 |
aaaacaccctattgcttcatg |
30858703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 250
Target Start/End: Original strand, 30817024 - 30817242
Alignment:
| Q |
32 |
cattatttccaatatacatttcttcatttcatctcttctcacaatttgtttctcatcaattggaacccttattccaattttccaaacatcttcaataaac |
131 |
Q |
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||||||||| ||||||| | ||||| | |||| ||||||| |||||||||||||||| | | || ||||| | |||||||| |||| ||| |||| |
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| T |
30817024 |
cattatttcacatatacaatccttcaatggatcttttctcactatttgtttctcatcaactaaaggtctaattcccactttccaaatatctacaagaaac |
30817123 |
T |
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| Q |
132 |
tttgcattggtggattgatctgaccattgtggcattgcaacaattggaattcctaagctaatagcttccaatgtggaattccaaccacaatgtgttacaa |
231 |
Q |
| |
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||||||| || ||| ||||| | |||| ||||| |||||||| | ||||| || | |||||||||||||||||||||||||||||||||||||| |
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| T |
30817124 |
tttgcatcaatgccttggtctgagtaaagtggtattgctacaattgggactcctatactcaaagcttccaatgtggaattccaaccacaatgtgttacaa |
30817223 |
T |
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| Q |
232 |
aacaccctatagattcatg |
250 |
Q |
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|||||||||| | |||||| |
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| T |
30817224 |
aacaccctattgcttcatg |
30817242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 252
Target Start/End: Original strand, 13724852 - 13725000
Alignment:
| Q |
104 |
tccaattttccaaacatcttcaataaactttgcattggtggattgatctgaccattgtggcattgcaacaattggaattcctaagctaatagcttccaat |
203 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| ||| |||||||| ||| |||||||||||| | ||| ||| | || | |||||||||| |
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| T |
13724852 |
tccaattttccaaacatcaacaataaactttgcatttgtgatttgatctgtccaaagtggcattgcaatcaccagaactccaacactcaaagcttccaat |
13724951 |
T |
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| Q |
204 |
gtggaattccaaccacaatgtgttacaaaacaccctatagattcatgtg |
252 |
Q |
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|| || |||||||||||||||||||||||||| || | || |||||||| |
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| T |
13724952 |
gtcgagttccaaccacaatgtgttacaaaacaaccaacagcttcatgtg |
13725000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 253
Target Start/End: Original strand, 13695524 - 13695671
Alignment:
| Q |
106 |
caattttccaaacatcttcaataaactttgcattggtggattgatctgaccattgtggcattgcaacaattggaattcctaagctaatagcttccaatgt |
205 |
Q |
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| T |
13695524 |
caattttccatacatcaacaataaactttgcatttgtaatttgatcagtccaaattggcatcgcaatcatcggaactcctaaactcaaagcttccaatgt |
13695623 |
T |
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| Q |
206 |
ggaattccaaccacaatgtgttacaaaacaccctatagattcatgtgc |
253 |
Q |
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| T |
13695624 |
tgaattccaaccacaatgtgttacaaaacatccaacagcttcatgtgc |
13695671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 252
Target Start/End: Complemental strand, 13688483 - 13688330
Alignment:
| Q |
99 |
cttattccaattttccaaacatcttcaataaactttgcattggtggattgatctgaccattgtggcattgcaacaattggaattcctaagctaatagctt |
198 |
Q |
| |
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|||| ||| |||||||||||||| |||||| ||||||||| || |||||| | ||| | |||||||||| | ||||| || | ||| | ||||| |
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| T |
13688483 |
cttactcccattttccaaacatcagcaataagctttgcattcgtaacttgatcggtccaaagcggcattgcaatcagtggaacaccgatgctcaaagctt |
13688384 |
T |
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| Q |
199 |
ccaatgtggaattccaaccacaatgtgttacaaaacaccctatagattcatgtg |
252 |
Q |
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|||| || || ||||||||||||||||| |||||||| |||| || |||||||| |
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| T |
13688383 |
ccaacgtcgagttccaaccacaatgtgtcacaaaacaacctaaagcttcatgtg |
13688330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 252
Target Start/End: Original strand, 13670139 - 13670283
Alignment:
| Q |
108 |
attttccaaacatcttcaataaactttgcattggtggattgatctgaccattgtggcattgcaacaattggaattcctaagctaatagcttccaatgtgg |
207 |
Q |
| |
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|||||||||||||| |||||| ||||||||| || |||||| | ||| |||||||||||| | |||| || | ||| | ||||||||| || | |
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| T |
13670139 |
attttccaaacatcagcaataagctttgcattcgtaacttgatcggtccaaagtggcattgcaatcaacggaacaccgatgctcaaagcttccaacgtcg |
13670238 |
T |
|
| Q |
208 |
aattccaaccacaatgtgttacaaaacaccctatagattcatgtg |
252 |
Q |
| |
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| T |
13670239 |
agttccaaccacaatgtgtcacaaaacaacctaaagcttcatgtg |
13670283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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