View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11797_low_1 (Length: 474)
Name: NF11797_low_1
Description: NF11797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11797_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 178 - 457
Target Start/End: Original strand, 3809590 - 3809874
Alignment:
| Q |
178 |
tatgggattatcatgtagaagaagatcatgtctatatgctgctattgaagctcaagatagaatacggctcccatcacaaaagggttcagattatatggta |
277 |
Q |
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| T |
3809590 |
tatgcgattatcatgtagaagaagatcatgtctatatgctgctattgaagctcaagatagaatacggctcccatcacaaaagggttcagattacatggta |
3809689 |
T |
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| Q |
278 |
tgtcttcaagctaagtttaagtttacatatgnnnnnnn-----ataattgatgtgtttacatattttattatagaggcttaagtgtgtttgtttgttgtg |
372 |
Q |
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| T |
3809690 |
tgtcttcaagctaagtttaagtttacatatatatattttttttataattgatgtgtttacatattttattatagaggcttacgtgtgtttgtttgttgtg |
3809789 |
T |
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| Q |
373 |
tagggattcacttatcgtgaactatttaatgacatcatccacaaagaatgcaaaaaactaagcaattaagtttggaggaaattgg |
457 |
Q |
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| T |
3809790 |
tagggattcacttatcctgaactatttaatgatatcatccacaaagaatgcaaaaaactgagcaattaagtttggaggaaattgg |
3809874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 3808958 - 3809034
Alignment:
| Q |
108 |
ctctgtgttgattctcatctgtacacctatattaatgtgtttcttcttaatatttatgtcacgggtgcactatggga |
184 |
Q |
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| T |
3808958 |
ctctgtgttgattctcatctgtacacctatattgatgtgtttcttcttaatatttatgtcacagatgcactacggga |
3809034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 3808863 - 3808921
Alignment:
| Q |
13 |
tggacatcaattatgcgataagcttaacataacttgccatttactcatgtagaggtcga |
71 |
Q |
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| T |
3808863 |
tggacatcaattatgcgataagcttaacggaacttgccatttactcatgcagaggtcga |
3808921 |
T |
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