View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11798_high_1 (Length: 500)

Name: NF11798_high_1
Description: NF11798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11798_high_1
NF11798_high_1
[»] chr7 (2 HSPs)
chr7 (131-482)||(42080091-42080442)
chr7 (184-288)||(36838019-36838122)
[»] scaffold0377 (1 HSPs)
scaffold0377 (131-482)||(14925-15276)
[»] chr6 (4 HSPs)
chr6 (252-482)||(4031400-4031629)
chr6 (170-287)||(9452770-9452887)
chr6 (170-287)||(33350207-33350323)
chr6 (249-287)||(24175074-24175112)
[»] scaffold1743 (1 HSPs)
scaffold1743 (170-287)||(146-263)
[»] chr8 (5 HSPs)
chr8 (170-287)||(19263262-19263379)
chr8 (170-287)||(23683184-23683300)
chr8 (170-287)||(45245040-45245156)
chr8 (170-287)||(357569-357685)
chr8 (325-374)||(40260468-40260517)
[»] chr5 (1 HSPs)
chr5 (170-287)||(27594473-27594589)
[»] chr3 (6 HSPs)
chr3 (170-287)||(20788502-20788618)
chr3 (170-287)||(30171088-30171204)
chr3 (170-287)||(40056582-40056698)
chr3 (170-287)||(50414-50531)
chr3 (170-287)||(14044346-14044462)
chr3 (170-287)||(39183121-39183237)
[»] chr2 (2 HSPs)
chr2 (170-287)||(24968011-24968127)
chr2 (263-301)||(5788095-5788133)
[»] chr1 (6 HSPs)
chr1 (170-287)||(19065658-19065774)
chr1 (170-287)||(19113548-19113664)
chr1 (170-290)||(22538441-22538560)
chr1 (170-282)||(47783217-47783329)
chr1 (170-253)||(21469728-21469811)
chr1 (170-287)||(7844523-7844639)
[»] scaffold0029 (1 HSPs)
scaffold0029 (170-253)||(15381-15464)
[»] scaffold0159 (1 HSPs)
scaffold0159 (263-301)||(32468-32506)
[»] chr4 (3 HSPs)
chr4 (170-276)||(22681123-22681229)
chr4 (170-287)||(17675191-17675307)
chr4 (178-218)||(13919083-13919123)


Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 131 - 482
Target Start/End: Original strand, 42080091 - 42080442
Alignment:
Q  131 cagttaatcataatgttgttactcccatgggatcccaagttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatct 230  Q
    |||||||||||||||||||||||  ||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  42080091 cagttaatcataatgttgttactatcataggatccgaagttgagtttgataatcacattagactatgagaaaccacacaagtgatattgaaggcacatct 42080190  T
Q  231 accccttaaaccttaaggcattagttataagggtcatgtcacttatatgttgctcaatatacactcttacaactaacgtggaagcttagctcagttgaca 330  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  | |||||||||||||| ||||||||||||||||| ||||||    
T  42080191 accccttaaaccttaaggcattagttataagagtcatgtcacttatatgttgctcaacttgcactcttacaactagcgtggaagcttagctcacttgaca 42080290  T
Q  331 cattaacatatctacctcaagtatgagactttccacatttgtgaccaaccaccaaaaaccactcgagcttctccacaaagaggaactgggctacactggc 430  Q
     ||||||||||||||||||||||||| ||| | | ||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||    
T  42080291 tattaacatatctacctcaagtatgacactcttcgcatctgtgaccaaccaccaaaaaccactcgagcttcctcacaaagaggaactgggctacactagc 42080390  T
Q  431 gttaggatatctaggagagtcaacactggtgtggattgatccattggataga 482  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  42080391 gttgggatatctgggagagtcaacactggtgtggattgatccattggataga 42080442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 36838019 - 36838122
Alignment:
Q  184 cacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcattagttataagggtcatgtcacttatatgttgc 283  Q
    |||||||||||| ||||||| ||| || ||| |||||   ||| ||| | ||||||||||||||||||||  |||| | ||||| ||| |||||| ||||    
T  36838019 cacattagacta-gagaaaccacataaatgatattgacaccacgtcttcaccttaaaccttaaggcattatgtatacgtgtcatatcatttatatattgc 36838117  T
Q  284 tcaat 288  Q
    |||||    
T  36838118 tcaat 36838122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 131 - 482
Target Start/End: Original strand, 14925 - 15276
Alignment:
Q  131 cagttaatcataatgttgttactcccatgggatcccaagttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatct 230  Q
    |||||||||||| ||||||||||  |||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  14925 cagttaatcatattgttgttactatcatgggatcctaagtttagtttgataatcacattagactatgagaaaccacacaagtgatattgaaggcacatct 15024  T
Q  231 accccttaaaccttaaggcattagttataagggtcatgtcacttatatgttgctcaatatacactcttacaactaacgtggaagcttagctcagttgaca 330  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||  | | |||||||||||| ||||||||||||||||| |||||     
T  15025 accccttaaaccttaaggcattagttataagagtcatatcacttatatgttgctcaacttgccctcttacaactagcgtggaagcttagctcacttgacg 15124  T
Q  331 cattaacatatctacctcaagtatgagactttccacatttgtgaccaaccaccaaaaaccactcgagcttctccacaaagaggaactgggctacactggc 430  Q
     ||||||||||||||||||||||||| ||| | | ||| |||||||||||||||||||||||||||| |||  |||||||||||||| ||||||||| ||    
T  15125 tattaacatatctacctcaagtatgacactcttcgcatctgtgaccaaccaccaaaaaccactcgaggttcctcacaaagaggaactaggctacactagc 15224  T
Q  431 gttaggatatctaggagagtcaacactggtgtggattgatccattggataga 482  Q
    ||| |||||||| ||| |||||||||||||||||||||||||||||||||||    
T  15225 gttgggatatctgggaaagtcaacactggtgtggattgatccattggataga 15276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 252 - 482
Target Start/End: Complemental strand, 4031629 - 4031400
Alignment:
Q  252 tagttataagggtcatgtcacttatatgttgctcaatatacactcttacaactaacgtggaagcttagctcagttgacacattaacatatctacctcaag 351  Q
    |||||||||||||||| ||||||||||||||||||| || |||||||| | |||| |||||| |||| |||| ||||||||||||||| ||| ||| |||    
T  4031629 tagttataagggtcatatcacttatatgttgctcaacatccactcttatatctaatgtggaaccttaactcacttgacacattaacatctcttccttaag 4031530  T
Q  352 tatgagactttccacatttgtgaccaaccaccaaaaaccactcgagcttctccacaaagaggaactgggctacactggcgttaggatatctaggagagtc 451  Q
    ||||||||| |||||||  |||| |||||| ||| ||||||| ||||||| ||| ||||||||||||| ||||||| | ||| |||||||||||||||||    
T  4031529 tatgagactctccacatccgtgatcaaccaacaagaaccacttgagcttccccataaagaggaactggactacactagtgttgggatatctaggagagtc 4031430  T
Q  452 aacactggtgtggattgatccattggataga 482  Q
    ||||||  ||||||||||||| |||||||||    
T  4031429 aacact-ctgtggattgatccgttggataga 4031400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 287
Target Start/End: Original strand, 9452770 - 9452887
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcattagttataagggtcatgt 269  Q
    ||||||||||| ||||||||| || | ||||| | | ||||||||| |||||  || |||| | |  |||||||||||  ||||| |||| ||||||| |    
T  9452770 ttgagtttgatcatcacattaaacaaagagaatctatacaagtgagtttgaaaccatatcttcactctaaaccttaagaaattagatatatgggtcatat 9452869  T
Q  270 cacttatatgttgctcaa 287  Q
    |||||||||||| |||||    
T  9452870 cacttatatgttactcaa 9452887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 287
Target Start/End: Original strand, 33350207 - 33350323
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcattagttataagggtcatgt 269  Q
    ||||||||||| ||||| ||||| ||  |||||| ||||||||||| |||||  ||||||| |  ||||||||||||| |||||  |||| | ||||| |    
T  33350207 ttgagtttgatcatcacgttagattaaaagaaaccacacaagtgagtttgaaaccacatctccatcttaaaccttaagtcatta-atatatgagtcatat 33350305  T
Q  270 cacttatatgttgctcaa 287  Q
    ||||||||| ||| ||||    
T  33350306 cacttatatattgttcaa 33350323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 287
Target Start/End: Complemental strand, 24175112 - 24175074
Alignment:
Q  249 cattagttataagggtcatgtcacttatatgttgctcaa 287  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  24175112 cattaggtataagggtcatctcacttatatgttgctcaa 24175074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 287
Target Start/End: Original strand, 146 - 263
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcattagttataagggtcatgt 269  Q
    |||| |||||| ||||||||||||||  ||| || ||| ||||||||||||   ||||||| |  | ||||||||||| |||||| |||| | ||||| |    
T  146 ttgaatttgatcatcacattagactaacagataccacaaaagtgagattgacaccacatctccatcctaaaccttaagacattagatatatgagtcatat 245  T
Q  270 cacttatatgttgctcaa 287  Q
    ||||||| ||||| ||||    
T  246 cacttatttgttgttcaa 263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 287
Target Start/End: Original strand, 19263262 - 19263379
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcattagttataagggtcatgt 269  Q
    |||| |||||| ||||||||||||||  ||| || ||| ||||||||||||   ||||||| |  | ||||||||||| |||||| |||| | ||||| |    
T  19263262 ttgaatttgatcatcacattagactaacagataccacaaaagtgagattgacaccacatctccatcctaaaccttaagacattaggtatatgagtcatat 19263361  T
Q  270 cacttatatgttgctcaa 287  Q
    ||||||| ||||| ||||    
T  19263362 cacttatttgttgttcaa 19263379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 287
Target Start/End: Complemental strand, 23683300 - 23683184
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcattagttataagggtcatgt 269  Q
    ||||||||||| ||||| ||||| ||  |||||| ||||||||||| |||||  ||||||| |  ||||||||||||| |||||  |||| | ||||| |    
T  23683300 ttgagtttgatcatcacgttagattaaaagaaaccacacaagtgagtttgaaaccacatctccatcttaaaccttaagtcatta-atatatgagtcatat 23683202  T
Q  270 cacttatatgttgctcaa 287  Q
    ||||||||| ||| ||||    
T  23683201 cacttatatattgttcaa 23683184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 287
Target Start/End: Complemental strand, 45245156 - 45245040
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcattagttataagggtcatgt 269  Q
    ||||||||||| ||||| ||||| ||  |||||| ||||||||||| ||||   ||||||| | |||||||||||||| |||||  |||| | || || |    
T  45245156 ttgagtttgatcatcacgttagattaaaagaaaccacacaagtgagtttgacaccacatcttcaccttaaaccttaagtcatta-atatatgagttatat 45245058  T
Q  270 cacttatatgttgctcaa 287  Q
    ||||||||||||| ||||    
T  45245057 cacttatatgttgttcaa 45245040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 287
Target Start/End: Complemental strand, 357685 - 357569
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcattagttataagggtcatgt 269  Q
    ||||||||||| ||||| ||||| ||  | |||| ||||||||||| |||||  ||||||| |  ||||||||||||| |||||  |||| | ||||| |    
T  357685 ttgagtttgatcatcacgttagattaaaataaaccacacaagtgagtttgaaaccacatcttcatcttaaaccttaagtcatta-atatatgagtcatat 357587  T
Q  270 cacttatatgttgctcaa 287  Q
    ||||||||| ||| ||||    
T  357586 cacttatatattgttcaa 357569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 374
Target Start/End: Complemental strand, 40260517 - 40260468
Alignment:
Q  325 ttgacacattaacatatctacctcaagtatgagactttccacatttgtga 374  Q
    ||||||||||||||| ||| |||||||||||||||| ||  |||||||||    
T  40260517 ttgacacattaacatctcttcctcaagtatgagactctctgcatttgtga 40260468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 287
Target Start/End: Original strand, 27594473 - 27594589
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcattagttataagggtcatgt 269  Q
    ||||||||||| ||||| ||||| ||  |||||| ||||||||||  ||||   ||||||| | |||||||||||||| |||||  |||| |||| || |    
T  27594473 ttgagtttgatcatcacgttagattaaaagaaaccacacaagtgattttgacaccacatcttcaccttaaaccttaagtcatta-atatatgggttatat 27594571  T
Q  270 cacttatatgttgctcaa 287  Q
    ||||||||||||| ||||    
T  27594572 cacttatatgttgttcaa 27594589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 287
Target Start/End: Complemental strand, 20788618 - 20788502
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcattagttataagggtcatgt 269  Q
    ||||||||||| ||||| ||||| ||  |||||| ||||||||||| |||||  ||||||| |  ||||||||||||| |||||  |||| | ||||| |    
T  20788618 ttgagtttgatcatcacgttagattaaaagaaaccacacaagtgagtttgaaaccacatctccatcttaaaccttaagtcatta-atatatgagtcatat 20788520  T
Q  270 cacttatatgttgctcaa 287  Q
    ||||||||| ||| ||||    
T  20788519 cacttatatattgttcaa 20788502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 287
Target Start/End: Original strand, 30171088 - 30171204
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcattagttataagggtcatgt 269  Q
    ||||||||||| ||||| ||||| ||  |||||| ||||||||||| |||||  ||||||| |  ||||||||||||| |||||  |||| | ||||| |    
T  30171088 ttgagtttgatcatcacgttagattaaaagaaaccacacaagtgagtttgaaaccacatctccatcttaaaccttaagtcatta-atatatgagtcatat 30171186  T
Q  270 cacttatatgttgctcaa 287  Q
    ||||||||| ||| ||||    
T  30171187 cacttatatattgttcaa 30171204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 287
Target Start/End: Complemental strand, 40056698 - 40056582
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcattagttataagggtcatgt 269  Q
    ||||||||||| ||||| ||||| ||  |||||| ||||||||||| ||||   ||||||| | || ||||||||||| |||||  |||| |||| || |    
T  40056698 ttgagtttgatcatcacgttagattaaaagaaaccacacaagtgagtttgacaccacatcttcaccataaaccttaagtcatta-atatatgggttatat 40056600  T
Q  270 cacttatatgttgctcaa 287  Q
    ||||||||||||| ||||    
T  40056599 cacttatatgttgttcaa 40056582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 287
Target Start/End: Complemental strand, 50531 - 50414
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcattagttataagggtcatgt 269  Q
    |||| |||||| ||||||||||||||  ||| || ||| ||||||||||||   ||||||| |  |  |||||||||| |||||| |||| | ||||| |    
T  50531 ttgaatttgatcatcacattagactaacagataccacaaaagtgagattgacaccacatctccatcccaaaccttaagacattaggtatatgagtcatat 50432  T
Q  270 cacttatatgttgctcaa 287  Q
    ||||||| ||||| ||||    
T  50431 cacttatttgttgttcaa 50414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 287
Target Start/End: Complemental strand, 14044462 - 14044346
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcattagttataagggtcatgt 269  Q
    ||||||||||| ||||| ||||| ||  |||||| ||||||||||| ||||   ||||| | |  ||||||||||||| |||||  |||| ||||||| |    
T  14044462 ttgagtttgatcatcacgttagattaaaagaaaccacacaagtgagtttgacaccacatattcatcttaaaccttaagtcatta-atatatgggtcatat 14044364  T
Q  270 cacttatatgttgctcaa 287  Q
    |||||| |||||| ||||    
T  14044363 cacttaaatgttgttcaa 14044346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 287
Target Start/End: Complemental strand, 39183237 - 39183121
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcattagttataagggtcatgt 269  Q
    ||||||||||| ||||| ||||| ||  |||||| ||||||||||| |||    ||||||| | || ||||||||||| |||||  |||| |||| || |    
T  39183237 ttgagtttgatcatcacgttagattaaaagaaaccacacaagtgagtttggcaccacatcttcaccctaaaccttaagtcatta-atatatgggttatat 39183139  T
Q  270 cacttatatgttgctcaa 287  Q
    ||||||||||||| ||||    
T  39183138 cacttatatgttgttcaa 39183121  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 287
Target Start/End: Complemental strand, 24968127 - 24968011
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcattagttataagggtcatgt 269  Q
    ||||||||||| ||||| ||||| ||  |||||| ||||||||||| ||||   ||||||| | || ||||||||||| |||||  |||| |||| || |    
T  24968127 ttgagtttgatcatcacgttagattaaaagaaaccacacaagtgagtttgacaccacatcttcaccctaaaccttaagtcatta-atatatgggttatat 24968029  T
Q  270 cacttatatgttgctcaa 287  Q
    ||||||||||||| ||||    
T  24968028 cacttatatgttgttcaa 24968011  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 301
Target Start/End: Original strand, 5788095 - 5788133
Alignment:
Q  263 gtcatgtcacttatatgttgctcaatatacactcttaca 301  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  5788095 gtcatctcacttatatgttgctcaatatatactcttaca 5788133  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 287
Target Start/End: Original strand, 19065658 - 19065774
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcattagttataagggtcatgt 269  Q
    ||||||||||| ||||| ||||| ||  | |||| ||||||||||| |||||  ||||||| |  ||||||||||||| |||||  |||| ||||||| |    
T  19065658 ttgagtttgatcatcacgttagattaaaataaaccacacaagtgagtttgaaaccacatctccatcttaaaccttaagtcatta-atatatgggtcatat 19065756  T
Q  270 cacttatatgttgctcaa 287  Q
    ||||||||| ||| ||||    
T  19065757 cacttatatattgttcaa 19065774  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 287
Target Start/End: Original strand, 19113548 - 19113664
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcattagttataagggtcatgt 269  Q
    ||||||||||| ||||| ||||| ||  | |||| ||||||||||| |||||  ||||||| |  ||||||||||||| |||||  |||| ||||||| |    
T  19113548 ttgagtttgatcatcacgttagattaaaataaaccacacaagtgagtttgaaaccacatctccatcttaaaccttaagtcatta-atatatgggtcatat 19113646  T
Q  270 cacttatatgttgctcaa 287  Q
    ||||||||| ||| ||||    
T  19113647 cacttatatattgttcaa 19113664  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 290
Target Start/End: Complemental strand, 22538560 - 22538441
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcattagttataagggtcatgt 269  Q
    ||||||||||| ||||| ||||| ||  |||||| ||||||||||| |||||  |||||||    ||||||||||||| |||||  |||| | ||||| |    
T  22538560 ttgagtttgatcatcacgttagattaaaagaaaccacacaagtgagtttgaaaccacatctctatcttaaaccttaagtcatta-atatatgagtcatat 22538462  T
Q  270 cacttatatgttgctcaatat 290  Q
    ||||||||| ||| |||||||    
T  22538461 cacttatatattgttcaatat 22538441  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 282
Target Start/End: Complemental strand, 47783329 - 47783217
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcattagttataagggtcatgt 269  Q
    |||| |||||| ||||||||| ||||  | | || ||||||||||||||||    |||||| | || |||||||||||||||||  |||| | ||||| |    
T  47783329 ttgattttgatcatcacattatactaacatataccacacaagtgagattgagactacatcttcaccctaaaccttaaggcattatgtatatgagtcatat 47783230  T
Q  270 cacttatatgttg 282  Q
    |||||||||||||    
T  47783229 cacttatatgttg 47783217  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 253
Target Start/End: Original strand, 21469728 - 21469811
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcatta 253  Q
    ||||||||||| ||||| ||||| ||  |||||| ||||||||||| |||||  ||||||| |  ||||||||||||| |||||    
T  21469728 ttgagtttgatcatcacgttagattaaaagaaaccacacaagtgagtttgaaaccacatcttcatcttaaaccttaagtcatta 21469811  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 287
Target Start/End: Original strand, 7844523 - 7844639
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcattagttataagggtcatgt 269  Q
    ||||||||||| ||||| ||||| ||  |||||| ||||||||||| ||||   ||||||| | |  ||||||||||| |||||  |||| |||| || |    
T  7844523 ttgagtttgatcatcacgttagattaaaagaaaccacacaagtgagtttgacaccacatcttcactctaaaccttaagtcatta-atatatgggttatat 7844621  T
Q  270 cacttatatgttgctcaa 287  Q
    ||||||||||||| ||||    
T  7844622 cacttatatgttgttcaa 7844639  T

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Target: scaffold0029 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 253
Target Start/End: Original strand, 15381 - 15464
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcatta 253  Q
    ||||||||||| ||||| ||||| ||  |||||| ||||||||||| |||||  ||||||| |  ||||||||||||| |||||    
T  15381 ttgagtttgatcatcacgttagattaaaagaaaccacacaagtgagtttgaaaccacatctccatcttaaaccttaagtcatta 15464  T

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Target: scaffold0159 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 301
Target Start/End: Original strand, 32468 - 32506
Alignment:
Q  263 gtcatgtcacttatatgttgctcaatatacactcttaca 301  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  32468 gtcatctcacttatatgttgctcaatatatactcttaca 32506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 22681123 - 22681229
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcattagttataagggtcatgt 269  Q
    |||| ||||||  |||||||||||||  ||| || ||| ||||||||||||   ||||||| | || ||||||||||| |||||| |||| | ||||| |    
T  22681123 ttgaatttgatcgtcacattagactaacagataccacaaaagtgagattgacaccacatctccaccctaaaccttaagacattaggtatatgagtcatat 22681222  T
Q  270 cacttat 276  Q
    |||||||    
T  22681223 cacttat 22681229  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 287
Target Start/End: Original strand, 17675191 - 17675307
Alignment:
Q  170 ttgagtttgataatcacattagactatgagaaacgacacaagtgagattgaaggcacatctaccccttaaaccttaaggcattagttataagggtcatgt 269  Q
    ||||||||||| ||||| ||||| ||  | |||  ||||||||||| ||||   ||||||| | || ||||||||||| |||||| |||| |||| || |    
T  17675191 ttgagtttgatcatcacgttagattaaaaaaaatcacacaagtgagtttgacaccacatcttcaccctaaaccttaagtcattag-tatatgggttatat 17675289  T
Q  270 cacttatatgttgctcaa 287  Q
    ||||||||||||| ||||    
T  17675290 cacttatatgttgttcaa 17675307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 13919123 - 13919083
Alignment:
Q  178 gataatcacattagactatgagaaacgacacaagtgagatt 218  Q
    |||||||||||||||||| ||||||| || |||||||||||    
T  13919123 gataatcacattagactaagagaaactactcaagtgagatt 13919083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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