View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11798_high_2 (Length: 465)
Name: NF11798_high_2
Description: NF11798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11798_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 361 - 447
Target Start/End: Complemental strand, 13021737 - 13021652
Alignment:
| Q |
361 |
tgcaaaaattacttcatttgactctataatcaaatgcagtaatacaaaatgaatgcaattggaaagtgtcattcaaacttgtatcat |
447 |
Q |
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| T |
13021737 |
tgcaaaaattacttcatttgactctataatcaa-tgcagtaatacaaaatgaatgcaattggaaagtgtcattcaaacttgtatcat |
13021652 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 35556397 - 35556440
Alignment:
| Q |
264 |
catggtaacaaatattctaaaaatattgtttaaggaatctatta |
307 |
Q |
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| T |
35556397 |
catgttaacaaatgttctaaaaatattgtttaaggaatttatta |
35556440 |
T |
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