View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11798_high_3 (Length: 380)
Name: NF11798_high_3
Description: NF11798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11798_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 363
Target Start/End: Complemental strand, 11711696 - 11711344
Alignment:
| Q |
11 |
cagagacaagtgactctgtatcatctcaaatgcctctgaagaatgaacagcttctaacttaaactcttgatttggccatgaatccacttgttcattagga |
110 |
Q |
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| T |
11711696 |
cagagacaagtgactctgtatcatctcaaatgcctctgaagaatgaacagcttctaacttaaactcttgatttggccatgaatccacttgttcattagga |
11711597 |
T |
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| Q |
111 |
tctgaggttgctgatatttttgggatcattgaaattttgttctctttaaatttgttcacgattaagcagtacattatctcttccagtgttgtgcgctttt |
210 |
Q |
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| T |
11711596 |
tctgaggttgctgatatttttgggatcattgaaattttgttctctttaaatttgttcacgattaagcagtacattatctcttccagtgttgtgcgctttt |
11711497 |
T |
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| Q |
211 |
ctttctctttaatttcagctatcctcctaaaattcagatttaaaaaagattgatcacatttacactaccaataactaaataaacaaataaccaatattca |
310 |
Q |
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| T |
11711496 |
ctttctctttaatttcagctatcctcctaaaattcagatttaaaaaagattgatcacatttacactaccaataactaaataaacaaataaccaatattca |
11711397 |
T |
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| Q |
311 |
tgcaaatatattctactttaatgtttcaatctttcagtggtttggcagataaa |
363 |
Q |
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| T |
11711396 |
tgcaaatatattctactttaatgtttcaatctttcagtggtttggcagataaa |
11711344 |
T |
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