View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11798_low_10 (Length: 207)
Name: NF11798_low_10
Description: NF11798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11798_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 77; Significance: 6e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 66 - 154
Target Start/End: Complemental strand, 41707282 - 41707194
Alignment:
| Q |
66 |
ctctcactagcgtggttccccgagctcccctcgtgattcaacacacttttaataacaacattgacaattttaaaagaaattgcacctct |
154 |
Q |
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| T |
41707282 |
ctctcactagcgtggttccccgaactcccctcatgatccaacacacttttaataacaacattgacaattttaaaagaaattgcacctct |
41707194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 41707456 - 41707407
Alignment:
| Q |
17 |
cagagacgaagggtacgaccaag-catccggttcatttgctgcagaaagc |
65 |
Q |
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| T |
41707456 |
cagagacgaagggtacgaccaaggcatccggttcatttgctgcagaaagc |
41707407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 41707506 - 41707470
Alignment:
| Q |
66 |
ctctcactagcgtggttccccgagctcccctcgtgat |
102 |
Q |
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| T |
41707506 |
ctctcactagcgtggttcctcgagctcccctcgtgat |
41707470 |
T |
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