View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11798_low_4 (Length: 367)

Name: NF11798_low_4
Description: NF11798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11798_low_4
NF11798_low_4
[»] chr1 (27 HSPs)
chr1 (199-362)||(13021352-13021522)
chr1 (19-69)||(31468191-31468241)
chr1 (19-69)||(31159445-31159495)
chr1 (19-69)||(45239196-45239246)
chr1 (19-69)||(48388069-48388119)
chr1 (19-69)||(51494433-51494483)
chr1 (19-69)||(14096749-14096799)
chr1 (19-69)||(27630421-27630471)
chr1 (19-69)||(37420305-37420355)
chr1 (19-69)||(37646521-37646571)
chr1 (19-69)||(37691251-37691301)
chr1 (19-69)||(48404388-48404438)
chr1 (17-69)||(2478290-2478341)
chr1 (25-69)||(51156849-51156893)
chr1 (19-66)||(36230415-36230462)
chr1 (19-69)||(23092827-23092877)
chr1 (19-69)||(33164470-33164520)
chr1 (19-69)||(45456112-45456162)
chr1 (24-69)||(29919434-29919479)
chr1 (19-67)||(29523761-29523809)
chr1 (29-69)||(45362775-45362815)
chr1 (19-69)||(19578870-19578921)
chr1 (19-69)||(30878504-30878555)
chr1 (19-69)||(10266921-10266971)
chr1 (19-69)||(37822628-37822678)
chr1 (22-69)||(45623491-45623538)
chr1 (19-69)||(17681222-17681271)
[»] chr4 (34 HSPs)
chr4 (17-69)||(16174976-16175028)
chr4 (17-69)||(52772812-52772864)
chr4 (22-69)||(4981573-4981620)
chr4 (19-69)||(2215243-2215293)
chr4 (19-69)||(3533268-3533318)
chr4 (19-69)||(8991844-8991894)
chr4 (19-69)||(13094351-13094401)
chr4 (19-69)||(16020908-16020958)
chr4 (19-69)||(27142291-27142341)
chr4 (19-69)||(33077835-33077885)
chr4 (19-69)||(40721096-40721146)
chr4 (19-69)||(46917472-46917522)
chr4 (19-69)||(55560440-55560490)
chr4 (21-69)||(38173618-38173666)
chr4 (19-62)||(35809224-35809267)
chr4 (19-69)||(6290661-6290711)
chr4 (19-69)||(13110622-13110672)
chr4 (19-69)||(19272844-19272894)
chr4 (19-69)||(27863776-27863826)
chr4 (19-69)||(34199230-34199280)
chr4 (17-69)||(3618415-3618466)
chr4 (17-69)||(34463985-34464036)
chr4 (19-69)||(45081372-45081423)
chr4 (19-69)||(23540387-23540437)
chr4 (19-69)||(28899393-28899443)
chr4 (19-69)||(52017405-52017457)
chr4 (17-64)||(31336320-31336367)
chr4 (19-69)||(18469329-18469378)
chr4 (19-69)||(33604718-33604768)
chr4 (19-69)||(48506567-48506617)
chr4 (24-69)||(17329873-17329918)
chr4 (32-69)||(55408530-55408567)
chr4 (19-65)||(48403864-48403911)
chr4 (19-69)||(56054078-56054127)
[»] chr3 (35 HSPs)
chr3 (17-69)||(32120399-32120451)
chr3 (19-69)||(47144235-47144285)
chr3 (17-69)||(42560961-42561013)
chr3 (19-69)||(6048657-6048707)
chr3 (19-69)||(17466577-17466627)
chr3 (19-69)||(25790736-25790786)
chr3 (19-69)||(50415791-50415841)
chr3 (19-68)||(36178666-36178715)
chr3 (17-69)||(4046040-4046092)
chr3 (21-69)||(41183338-41183386)
chr3 (17-69)||(44084369-44084420)
chr3 (19-69)||(5845101-5845151)
chr3 (19-69)||(10426392-10426442)
chr3 (19-69)||(11908081-11908131)
chr3 (19-69)||(26165515-26165565)
chr3 (19-69)||(37183024-37183074)
chr3 (19-69)||(38572115-38572165)
chr3 (19-69)||(48886947-48886997)
chr3 (19-69)||(50734078-50734128)
chr3 (19-69)||(50778727-50778777)
chr3 (19-69)||(51304400-51304450)
chr3 (22-69)||(27847474-27847521)
chr3 (19-69)||(51999197-51999248)
chr3 (19-69)||(29701744-29701794)
chr3 (19-69)||(30418391-30418440)
chr3 (19-69)||(55026801-55026851)
chr3 (24-69)||(12974736-12974781)
chr3 (19-69)||(6832446-6832496)
chr3 (19-69)||(20139422-20139473)
chr3 (19-58)||(52000034-52000073)
chr3 (24-69)||(28155187-28155232)
chr3 (32-69)||(35853153-35853190)
chr3 (30-67)||(42258400-42258437)
chr3 (32-69)||(49710350-49710387)
chr3 (41-69)||(35472601-35472629)
[»] chr2 (17 HSPs)
chr2 (17-69)||(44280052-44280104)
chr2 (19-69)||(24997142-24997192)
chr2 (18-69)||(14383028-14383079)
chr2 (19-69)||(4296733-4296783)
chr2 (19-69)||(7588464-7588514)
chr2 (19-69)||(12855081-12855131)
chr2 (19-69)||(22351576-22351626)
chr2 (19-69)||(30822545-30822595)
chr2 (19-69)||(1073045-1073095)
chr2 (19-69)||(43021803-43021853)
chr2 (22-69)||(1308659-1308706)
chr2 (22-69)||(8852122-8852169)
chr2 (19-69)||(9117874-9117924)
chr2 (19-69)||(17929217-17929267)
chr2 (19-69)||(7763451-7763499)
chr2 (30-69)||(13151445-13151484)
chr2 (22-69)||(36526886-36526933)
[»] chr8 (20 HSPs)
chr8 (19-69)||(40283535-40283585)
chr8 (19-69)||(23549773-23549823)
chr8 (19-69)||(26244557-26244607)
chr8 (19-69)||(29731754-29731804)
chr8 (19-69)||(43618310-43618360)
chr8 (19-69)||(44149930-44149980)
chr8 (19-69)||(45100986-45101036)
chr8 (17-69)||(35931920-35931971)
chr8 (19-69)||(15053692-15053742)
chr8 (19-69)||(35099495-35099545)
chr8 (19-69)||(42859985-42860035)
chr8 (19-69)||(43524352-43524402)
chr8 (19-64)||(43525055-43525100)
chr8 (19-67)||(13947426-13947474)
chr8 (19-69)||(12272443-12272493)
chr8 (19-69)||(44503227-44503277)
chr8 (21-69)||(38206975-38207023)
chr8 (19-65)||(1958146-1958191)
chr8 (19-69)||(5735346-5735396)
chr8 (19-69)||(1634802-1634852)
[»] chr7 (21 HSPs)
chr7 (19-69)||(45549580-45549630)
chr7 (19-69)||(5813159-5813209)
chr7 (19-69)||(20354284-20354334)
chr7 (19-69)||(33078746-33078796)
chr7 (19-69)||(35029070-35029120)
chr7 (19-69)||(42881419-42881469)
chr7 (19-69)||(47159456-47159506)
chr7 (19-69)||(30720181-30720231)
chr7 (19-69)||(39769790-39769840)
chr7 (19-69)||(40302452-40302502)
chr7 (22-69)||(37887911-37887958)
chr7 (19-65)||(30566661-30566707)
chr7 (19-69)||(32748858-32748908)
chr7 (19-69)||(36518576-36518625)
chr7 (19-69)||(37951810-37951860)
chr7 (25-69)||(28318005-28318049)
chr7 (19-69)||(32130231-32130282)
chr7 (19-65)||(33508491-33508537)
chr7 (19-69)||(26812174-26812225)
chr7 (22-67)||(38351643-38351688)
chr7 (32-69)||(43571055-43571092)
[»] chr6 (18 HSPs)
chr6 (19-69)||(26654297-26654347)
chr6 (19-69)||(26760267-26760317)
chr6 (19-69)||(631578-631628)
chr6 (19-69)||(2503285-2503335)
chr6 (21-69)||(17961225-17961273)
chr6 (19-69)||(34328341-34328391)
chr6 (19-69)||(197864-197914)
chr6 (19-69)||(8219005-8219055)
chr6 (19-61)||(8660619-8660661)
chr6 (19-69)||(8669950-8669999)
chr6 (19-69)||(10883932-10883982)
chr6 (19-69)||(12512973-12513023)
chr6 (19-69)||(24348493-24348543)
chr6 (23-69)||(24933243-24933289)
chr6 (19-69)||(30446304-30446354)
chr6 (19-69)||(34838641-34838690)
chr6 (19-69)||(12501892-12501942)
chr6 (19-69)||(34242366-34242416)
[»] chr5 (23 HSPs)
chr5 (19-69)||(40888954-40889004)
chr5 (19-69)||(13479785-13479835)
chr5 (19-69)||(23089578-23089628)
chr5 (19-69)||(27942551-27942601)
chr5 (19-69)||(29618975-29619025)
chr5 (19-69)||(31013805-31013855)
chr5 (19-67)||(19241376-19241424)
chr5 (17-69)||(42317946-42317997)
chr5 (19-69)||(30648074-30648124)
chr5 (22-69)||(7651066-7651113)
chr5 (22-69)||(23649129-23649176)
chr5 (22-69)||(23809395-23809442)
chr5 (19-69)||(4219406-4219456)
chr5 (19-69)||(31008346-31008396)
chr5 (19-69)||(32976538-32976587)
chr5 (19-69)||(39008540-39008590)
chr5 (19-69)||(39238474-39238524)
chr5 (19-69)||(42806961-42807011)
chr5 (19-69)||(3454796-3454845)
chr5 (19-69)||(25670867-25670917)
chr5 (19-69)||(27407003-27407053)
chr5 (22-69)||(32363576-32363623)
chr5 (19-69)||(36572381-36572431)
[»] scaffold0016 (1 HSPs)
scaffold0016 (19-69)||(66033-66083)
[»] scaffold0054 (1 HSPs)
scaffold0054 (19-67)||(57706-57754)
[»] scaffold0362 (1 HSPs)
scaffold0362 (19-69)||(5284-5334)


Alignment Details
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 199 - 362
Target Start/End: Complemental strand, 13021522 - 13021352
Alignment:
Q  199 gactaaaattttggtttacatgttaaga-------tacatattaaggactaatctccatcaaaaaattgtgaggcacacaatgtaagttatcctcactca 291  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13021522 gactaaaattttggtttacatgttaagaattaagatacatattaaggactaatctccatcagaaaattgtgaggcacacaatgtaagttatcctcactca 13021423  T
Q  292 atcaaattttcttttgaagagtcaatcgaacatttcaccacttaagtaacgtgtcaaagtttcatctcagt 362  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13021422 atcaaattttctcttgaagagtcaatcgaacatttcaccacttaagtaacgtgtcaaagtttcatatcagt 13021352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 31468191 - 31468241
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31468191 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 31468241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 31159445 - 31159495
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31159445 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 31159495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 45239196 - 45239246
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45239196 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 45239246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 48388119 - 48388069
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48388119 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 48388069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 51494483 - 51494433
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  51494483 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 51494433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 14096749 - 14096799
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  14096749 ttcaatttttacctctccaataattttttcattcaacaccctatcccacca 14096799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 27630471 - 27630421
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  27630471 ttcaatttttacatctccaatggttttttcattcaacaccctaccccacca 27630421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 37420355 - 37420305
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  37420355 ttcaatttttacatctccaatggttttttcattcaacaccctaccccacca 37420305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 37646571 - 37646521
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  37646571 ttcaatttttacctctccaatgattttttcattcaacaccctaccccacca 37646521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 37691301 - 37691251
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  37691301 ttcaatttttacctctccaatggttttttcattcaacaccctactccacca 37691251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 48404388 - 48404438
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  48404388 ttcaatttttacctctccaatgattttttcattcaacaccctaccccacca 48404438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 2478341 - 2478290
Alignment:
Q  17 ctttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  2478341 ctttcaatttttacctctccaatggtttttt-attcaacaccctaccccacca 2478290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 51156893 - 51156849
Alignment:
Q  25 ttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  51156893 ttttacctctccaatggttttttcattcaacaccctaccccacca 51156849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 36230415 - 36230462
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctacccca 66  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  36230415 ttcaatttttacctctccaatggttttttcattcaacactctacccca 36230462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 23092827 - 23092877
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||||||||    
T  23092827 ttcagtttttacctctccaatgattttttcattcaacaccctaccccacca 23092877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 33164470 - 33164520
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||| ||||||||  ||||||||||||||||||||||||||||    
T  33164470 ttcaatttttacatctccaatgattttttcattcaacaccctaccccacca 33164520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 45456162 - 45456112
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| | ||||||||||||||| |||||||||||    
T  45456162 ttcaatttttacctctccaatggatttttcattcaacactctaccccacca 45456112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 29919434 - 29919479
Alignment:
Q  24 tttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||    
T  29919434 tttttacctctccaatggttttttcattcaacactctaccccacca 29919479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 29523761 - 29523809
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccac 67  Q
    |||||||||||| ||||||||  ||||||||||||||||||||||||||    
T  29523761 ttcaatttttacatctccaatgattttttcattcaacaccctaccccac 29523809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 45362775 - 45362815
Alignment:
Q  29 acctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  45362775 acctctgcaatagttttttcattcaacaccctaccccacca 45362815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 19578921 - 19578870
Alignment:
Q  19 ttcaatttttacctctccaatag-ttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||| ||||    
T  19578921 ttcaatttttacctctccaattggttttttcattcaacaccctaccctacca 19578870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 30878555 - 30878504
Alignment:
Q  19 ttcaatttttacctctccaatagtt-ttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||||||| |||||||||||| | |||||||||||    
T  30878555 ttcaatttttacctctccaatagtttttttcattcaacgctctaccccacca 30878504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 10266971 - 10266921
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||| ||| ||||||||||||||||| |||| ||||||    
T  10266971 ttcaatttttacctctctaatggttttttcattcaacactctactccacca 10266921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 37822628 - 37822678
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||  ||||||| |||||||| |||||||||||    
T  37822628 ttcaatttttacctctccaatgattttttctttcaacactctaccccacca 37822678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 45623538 - 45623491
Alignment:
Q  22 aatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||| |||||| || ||||||||||||||||||||| |||||||    
T  45623538 aatttttatctctcctatggttttttcattcaacaccctatcccacca 45623491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 17681271 - 17681222
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||| ||| | |||||||||||||||| |||||||||||    
T  17681271 ttcaatttttacctctacaaga-ttttttcattcaacactctaccccacca 17681222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 16175028 - 16174976
Alignment:
Q  17 ctttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16175028 ctttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 16174976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 52772812 - 52772864
Alignment:
Q  17 ctttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  52772812 ctttcaatttttatctctccaatagttttttcattcaacaccctaccccacca 52772864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 4981573 - 4981620
Alignment:
Q  22 aatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4981573 aatttttacctctccaatagttttttcattcaacaccctaccccacca 4981620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 2215293 - 2215243
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2215293 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 2215243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 3533318 - 3533268
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3533318 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 3533268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 8991844 - 8991894
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8991844 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 8991894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 13094401 - 13094351
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13094401 ttcaatttttatctctccaatagttttttcattcaacaccctaccccacca 13094351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 16020908 - 16020958
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16020908 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 16020958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 27142341 - 27142291
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27142341 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 27142291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 33077885 - 33077835
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33077885 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 33077835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 40721096 - 40721146
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40721096 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 40721146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 46917522 - 46917472
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46917522 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 46917472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 55560490 - 55560440
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  55560490 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 55560440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 38173618 - 38173666
Alignment:
Q  21 caatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38173618 caatttttacctctccaatggttttttcattcaacaccctaccccacca 38173666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 35809224 - 35809267
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctac 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  35809224 ttcaatttttacctctccaatagttttttcattcaacaccctac 35809267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 6290661 - 6290711
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  6290661 ttcaatttttacctctccaatggttttttcattcaacaccctatcccacca 6290711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 13110622 - 13110672
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  13110622 ttcaatttttacctctccaatggttttttcattcaacaccctaacccacca 13110672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 19272844 - 19272894
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  19272844 ttcaatttttatctctccaatagttttttcattcaacatcctaccccacca 19272894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 27863776 - 27863826
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  27863776 ttcaatttttacctctccaataattttttcattcaacactctaccccacca 27863826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 34199280 - 34199230
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  34199280 ttcaatttttacctctccaatgattttttcattcaacaccctaccccacca 34199230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 3618466 - 3618415
Alignment:
Q  17 ctttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  3618466 ctttcaatttttacctctccaatggtttttt-attcaacaccctaccccacca 3618415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 34464036 - 34463985
Alignment:
Q  17 ctttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  34464036 ctttcaatttttacctctccaatagt-ttttcattcaacatcctaccccacca 34463985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 45081423 - 45081372
Alignment:
Q  19 ttcaatttttacctctccaatagtttttt-cattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  45081423 ttcaatttttacctctccaatggtttttttcattcaacaccctaccccacca 45081372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 23540437 - 23540387
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||  |||||||||||||||| |||||||||||    
T  23540437 ttcaatttttacctctccaatgattttttcattcaacactctaccccacca 23540387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 28899393 - 28899443
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||| ||| ||||||||||||||||| |||||||||||    
T  28899393 ttcaatttttacctctctaatggttttttcattcaacactctaccccacca 28899443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 52017405 - 52017457
Alignment:
Q  19 ttcaatttttacctctccaatagttttttca--ttcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||  ||||||||||||||||||||    
T  52017405 ttcaatttttacctctccaatggttttttcattttcaacaccctaccccacca 52017457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 31336367 - 31336320
Alignment:
Q  17 ctttcaatttttacctctccaatagttttttcattcaacaccctaccc 64  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||||||    
T  31336367 ctttcaatttttacctctccaaaggttttttcattcaacactctaccc 31336320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 18469378 - 18469329
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| | ||||||||||||||| |||||||||||    
T  18469378 ttcaatttttacctctccaat-ggtttttcattcaacactctaccccacca 18469329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 33604718 - 33604768
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| ||||||||||||||| | ||| |||||||    
T  33604718 ttcaatttttacctctccaatggttttttcattcaactctctatcccacca 33604768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 48506617 - 48506567
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||||    
T  48506617 ttcaatttttaactctccaatggttttttcatgcaacactctaccccacca 48506567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 17329918 - 17329873
Alignment:
Q  24 tttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||| ||||| ||||||||||||||||||||| |||||||    
T  17329918 tttttacctccccaatggttttttcattcaacaccctaacccacca 17329873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 55408567 - 55408530
Alignment:
Q  32 tctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||||||| |||||||||||    
T  55408567 tctccaatagttttttcattcaacactctaccccacca 55408530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 48403911 - 48403864
Alignment:
Q  19 ttcaatttttacctctccaat-agttttttcattcaacaccctacccc 65  Q
    ||||||||||||||||||||| | ||||| ||||||||||||||||||    
T  48403911 ttcaatttttacctctccaatgattttttccattcaacaccctacccc 48403864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 56054078 - 56054127
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||| ||||||||||  |||||||||||||||| |||||||||||    
T  56054078 ttcaattttt-cctctccaatgattttttcattcaacactctaccccacca 56054127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 32120451 - 32120399
Alignment:
Q  17 ctttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32120451 ctttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 32120399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 47144235 - 47144285
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47144235 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 47144285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 42560961 - 42561013
Alignment:
Q  17 ctttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42560961 ctttcaatttttaactctccaatagttttttcattcaacaccctaccccacca 42561013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 6048707 - 6048657
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6048707 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 6048657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 17466577 - 17466627
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17466577 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 17466627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 25790786 - 25790736
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25790786 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 25790736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 50415841 - 50415791
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  50415841 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 50415791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 36178715 - 36178666
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacc 68  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36178715 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacc 36178666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 4046040 - 4046092
Alignment:
Q  17 ctttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  4046040 cttttaatttttacctctccaatagctttttcattcaacaccctaccccacca 4046092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 41183338 - 41183386
Alignment:
Q  21 caatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41183338 caatttttacctctccaatggttttttcattcaacaccctaccccacca 41183386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 44084369 - 44084420
Alignment:
Q  17 ctttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44084369 ctttcaatttttacctctccaatagttttttcattcaaca-cctaccccacca 44084420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 5845151 - 5845101
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  5845151 ttcaatttttacatctccaatggttttttcattcaacaccctaccccacca 5845101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 10426442 - 10426392
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  10426442 ttcaatttttacctctccaatgattttttcattcaacaccctaccccacca 10426392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 11908081 - 11908131
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  11908081 ttcaatttttacctcttcaatggttttttcattcaacaccctaccccacca 11908131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 26165565 - 26165515
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  26165565 ttcaatttttacctctccaatggttttttcattcaaaaccctaccccacca 26165515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 37183074 - 37183024
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  37183074 ttcaatttttacctctccaatggttttttcatttaacaccctaccccacca 37183024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 38572165 - 38572115
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  38572165 ttcaatttttacctctccaatggttttttcattcaacactctaccccacca 38572115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 48886997 - 48886947
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  48886997 ttcaatttttacctctccaatggttttttcattcaacactctaccccacca 48886947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 50734078 - 50734128
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  50734078 ttcaatttttacctctccaatggttttttcattcaacatcctaccccacca 50734128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 50778777 - 50778727
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  50778777 ttcaatttttacctctccaatggttttttcattcaacatcctaccccacca 50778727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 51304400 - 51304450
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  51304400 ttcaatttttacctctccaatagttttttcattcaacactctaccctacca 51304450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 27847474 - 27847521
Alignment:
Q  22 aatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||    
T  27847474 aatttttacctcttcaatggttttttcattcaacaccctaccccacca 27847521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 51999248 - 51999197
Alignment:
Q  19 ttcaatttttacctctccaa-tagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  51999248 ttcaatttttatctctccaaatagttttttcattcaacaccctaccccacca 51999197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 29701744 - 29701794
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  29701744 ttcaatttttacccctccaatggttttttcattcaacaccctactccacca 29701794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 30418440 - 30418391
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  30418440 ttcaatttttacctctccaatggtttttt-attcaacaccctaccccacca 30418391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 55026801 - 55026851
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| ||||||||||||||||  |||||||||||    
T  55026801 ttcaatttttacctctccaatggttttttcattcaacattctaccccacca 55026851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 12974736 - 12974781
Alignment:
Q  24 tttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||    
T  12974736 tttttacctctccaatggttttttcattcaacactctaccccacca 12974781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 6832446 - 6832496
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||| ||||||||| ||||||||||||||||  |||||||||||    
T  6832446 ttcaatttttatctctccaatggttttttcattcaacattctaccccacca 6832496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 20139422 - 20139473
Alignment:
Q  19 ttcaatttttacct-ctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||| |||||||| ||||||| ||||||||||||||||| |||||||||||    
T  20139422 ttcaacttttaccttctccaatggttttttcattcaacactctaccccacca 20139473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 52000073 - 52000034
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacacc 58  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  52000073 ttcaatttttacatctccaatggttttttcattcaacacc 52000034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 28155232 - 28155187
Alignment:
Q  24 tttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||| |||||||||| ||||||||| ||||||| |||||||||||    
T  28155232 tttttgcctctccaatggttttttcagtcaacactctaccccacca 28155187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 35853190 - 35853153
Alignment:
Q  32 tctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  35853190 tctccaatggttttttcattcaacactctaccccacca 35853153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 42258400 - 42258437
Alignment:
Q  30 cctctccaatagttttttcattcaacaccctaccccac 67  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  42258400 cctcttcaatagttttttcattcaacactctaccccac 42258437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 49710387 - 49710350
Alignment:
Q  32 tctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  49710387 tctccaatggttttttcattcaacactctaccccacca 49710350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 35472629 - 35472601
Alignment:
Q  41 gttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||||||||||    
T  35472629 gttttttcattcaacaccctaccccacca 35472601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 44280052 - 44280104
Alignment:
Q  17 ctttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44280052 ctttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 44280104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 24997142 - 24997192
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24997142 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 24997192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 14383028 - 14383079
Alignment:
Q  18 tttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14383028 tttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 14383079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 4296783 - 4296733
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4296783 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 4296733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 7588514 - 7588464
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7588514 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 7588464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 12855081 - 12855131
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12855081 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 12855131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 22351626 - 22351576
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22351626 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 22351576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 30822595 - 30822545
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30822595 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 30822545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 1073095 - 1073045
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  1073095 ttcaatttttacctctccaatggttttttcattcaacactctaccccacca 1073045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 43021803 - 43021853
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  43021803 ttcaatttttacctctccaatggttctttcattcaacaccctaccccacca 43021853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 1308706 - 1308659
Alignment:
Q  22 aatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||    
T  1308706 aatttttacttctccaatggttttttcattcaacaccctaccccacca 1308659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 8852122 - 8852169
Alignment:
Q  22 aatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||    
T  8852122 aatttttatctctccaatggttttttcattcaacaccctaccccacca 8852169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 9117874 - 9117924
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| ||||||||||||||||  |||||||||||    
T  9117874 ttcaatttttacctctccaatggttttttcattcaacattctaccccacca 9117924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 17929267 - 17929217
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||| |||||||| ||||||||||||||||| ||| |||||||    
T  17929267 ttcaatttttacatctccaatggttttttcattcaacactctatcccacca 17929217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 7763499 - 7763451
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||  ||||||||| ||||||||||||||| ||||||||||||    
T  7763499 ttcaattttta--tctccaataattttttcattcaacatcctaccccacca 7763451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 13151484 - 13151445
Alignment:
Q  30 cctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  13151484 cctctccaatggttttttcattcaacactctaccccacca 13151445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 36526886 - 36526933
Alignment:
Q  22 aatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||  ||||||||||||||||| || |||||||    
T  36526886 aatttttacctctccaatgattttttcattcaacaccttatcccacca 36526933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 40283535 - 40283585
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283535 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 40283585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 23549773 - 23549823
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23549773 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 23549823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 26244557 - 26244607
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26244557 ttcaatttttacctctccaatagttttttcattcaacaccctatcccacca 26244607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 29731754 - 29731804
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29731754 ttcaatttttaactctccaatagttttttcattcaacaccctaccccacca 29731804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 43618360 - 43618310
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43618360 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 43618310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 44149930 - 44149980
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44149930 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 44149980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 45101036 - 45100986
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45101036 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 45100986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 35931920 - 35931971
Alignment:
Q  17 ctttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35931920 ctttcaatttttacctctccaatag-tttttcattcaacaccctaccccacca 35931971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 15053692 - 15053742
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  15053692 ttcaatttttaccactccaatggttttttcattcaacaccctaccccacca 15053742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 35099495 - 35099545
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  35099495 ttcaatttttacctctccaatgattttttcattcaacaccctaccccacca 35099545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 42859985 - 42860035
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  42859985 ttcaatttttacatctccaatggttttttcattcaacaccctaccccacca 42860035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 43524402 - 43524352
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  43524402 ttcaatttttacctctccaatgattttttcattcaacaccctaccccacca 43524352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 43525100 - 43525055
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccc 64  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  43525100 ttcaatttttacctctccaatggttttttcattcaacaccctaccc 43525055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 13947426 - 13947474
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccac 67  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  13947426 ttcaatttttacctctccaatggttttttcattcaacacactaccccac 13947474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 12272493 - 12272443
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| ||||||||||||||||  |||||||||||    
T  12272493 ttcaatttttacctctccaatggttttttcattcaacattctaccccacca 12272443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 44503227 - 44503277
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||||||||    
T  44503227 ttcaatttttatctcttcaatggttttttcattcaacaccctaccccacca 44503277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 38207023 - 38206975
Alignment:
Q  21 caatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||| ||||  ||||||||||||||||||||||||||||    
T  38207023 caatttttacctcttcaatgattttttcattcaacaccctaccccacca 38206975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 1958191 - 1958146
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctacccc 65  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||    
T  1958191 ttcaatttttacctctccaatggtttttt-attcaacaccctacccc 1958146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 5735346 - 5735396
Alignment:
Q  19 ttcaatttttacc-tctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||| |||||||| ||||| |||||||||||||||||||||||    
T  5735346 ttcaatttttaccctctccaatggtttt-tcattcaacaccctaccccacca 5735396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 1634852 - 1634802
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||| |||||||||||| ||| ||| ||||||||||||||||||| |||||    
T  1634852 ttcagtttttacctctctaatggttctttcattcaacaccctacctcacca 1634802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 45549630 - 45549580
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45549630 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 45549580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 5813159 - 5813209
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5813159 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 5813209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 20354284 - 20354334
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20354284 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 20354334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 33078796 - 33078746
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33078796 ttcaatttttacctctccaatagttttttcattcaacactctaccccacca 33078746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 35029120 - 35029070
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35029120 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 35029070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 42881419 - 42881469
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42881419 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 42881469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 47159506 - 47159456
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  47159506 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 47159456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 30720181 - 30720231
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  30720181 ttcaatttttacctcttcaatggttttttcattcaacaccctaccccacca 30720231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 39769790 - 39769840
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  39769790 ttcaatttttacctctctaatggttttttcattcaacaccctaccccacca 39769840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 40302502 - 40302452
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  40302502 ttcaatttttacctctccaatggttttttcattcaacaccttaccccacca 40302452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 37887911 - 37887958
Alignment:
Q  22 aatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||    
T  37887911 aatttttacctcttcaatagttttttcattcaacactctaccccacca 37887958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 30566661 - 30566707
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctacccc 65  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||    
T  30566661 ttcaatttttatctctccaatagttttttcattcaacactctacccc 30566707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 32748858 - 32748908
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||| ||||||||  ||||||||||||||||||||||||||||    
T  32748858 ttcaatttttacatctccaatgattttttcattcaacaccctaccccacca 32748908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 36518576 - 36518625
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  36518576 ttcaatttttacctctccaatggtttttt-attcaacaccctaccccacca 36518625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 37951810 - 37951860
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||| || |||||||    
T  37951810 ttcaatttttacctctccaatggttttttcattcaacaccttatcccacca 37951860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 28318049 - 28318005
Alignment:
Q  25 ttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||    
T  28318049 ttttaactcttcaatagttttttcattcaacaccctaccccacca 28318005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 32130282 - 32130231
Alignment:
Q  19 ttcaatttttacctctccaatag-ttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| | ||||||||||||||| ||||||||||||    
T  32130282 ttcaatttttacctctccaatggtttttttcattcaacatcctaccccacca 32130231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 33508537 - 33508491
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctacccc 65  Q
    |||||||||||||||||||||| |||||||||| ||||| |||||||    
T  33508537 ttcaatttttacctctccaataattttttcatttaacactctacccc 33508491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 26812174 - 26812225
Alignment:
Q  19 ttcaatttttacctctccaatagtttt-ttcattcaacaccctaccccacca 69  Q
    ||||| ||||||||||||||| ||||| ||||||||||| ||||||||||||    
T  26812174 ttcaaattttacctctccaatggtttttttcattcaacatcctaccccacca 26812225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 38351643 - 38351688
Alignment:
Q  22 aatttttacctctccaatagttttttcattcaacaccctaccccac 67  Q
    ||||||||||||||||||| |||||| ||||||| |||||| ||||    
T  38351643 aatttttacctctccaataatttttttattcaacgccctactccac 38351688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 43571092 - 43571055
Alignment:
Q  32 tctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  43571092 tctccaatggttttttcattcaacactctaccccacca 43571055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 26654347 - 26654297
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26654347 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 26654297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 26760317 - 26760267
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26760317 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 26760267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 631578 - 631628
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  631578 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 631628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 2503285 - 2503335
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2503285 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 2503335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 17961273 - 17961225
Alignment:
Q  21 caatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17961273 caatttttacctctccaatggttttttcattcaacaccctaccccacca 17961225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 34328341 - 34328391
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  34328341 ttcaatttttacatctccaatggttttttcattcaacaccctaccccacca 34328391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 197864 - 197914
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||| ||||||||  ||||||||||||||||||||||||||||    
T  197864 ttcaatttttacatctccaatgattttttcattcaacaccctaccccacca 197914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 8219005 - 8219055
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||| ||||||||||||||| ||||||||||||||||| |||||||||||    
T  8219005 ttcaacttttacctctccaatggttttttcattcaacactctaccccacca 8219055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 8660619 - 8660661
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacacccta 61  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  8660619 ttcaatttttacctctccaatggttttttcattcaacacccta 8660661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 8669950 - 8669999
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  8669950 ttcaatttttacctctccaatggtttt-tcattcaacaccctaccccacca 8669999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 10883932 - 10883982
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||  ||||||||||||||| ||||||||||||    
T  10883932 ttcaatttttacctctccaatgattttttcattcaacatcctaccccacca 10883982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 12512973 - 12513023
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||  |||||||||||||||| |||||||||||    
T  12512973 ttcaatttttacctctccaatgattttttcattcaacactctaccccacca 12513023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 24348493 - 24348543
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||| |||| ||||||||||||||||| |||||||||||    
T  24348493 ttcaatttttacctcttcaatggttttttcattcaacactctaccccacca 24348543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 24933289 - 24933243
Alignment:
Q  23 atttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||    
T  24933289 atttttacctctccaatggttttttcattcaacatcctaccccacca 24933243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 30446304 - 30446354
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||  |||||||||||||||| |||||||||||    
T  30446304 ttcaatttttacctctccaatgattttttcattcaacactctaccccacca 30446354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 34838641 - 34838690
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  34838641 ttcaatttttacctctccaatggtttttt-attcaacaccctaccccacca 34838690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 12501892 - 12501942
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||| |||  |||||||||||||||| |||||||||||    
T  12501892 ttcaatttttacctctctaatgattttttcattcaacactctaccccacca 12501942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 34242366 - 34242416
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||| |||||||||||||  |||||||||||||||| |||||||||||    
T  34242366 ttcaattcttacctctccaatgattttttcattcaacactctaccccacca 34242416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 40888954 - 40889004
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40888954 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 40889004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 13479835 - 13479785
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13479835 ttcaatttttacatctccaatagttttttcattcaacaccctaccccacca 13479785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 23089578 - 23089628
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23089578 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 23089628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 27942551 - 27942601
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27942551 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 27942601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 29619025 - 29618975
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29619025 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 29618975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 31013855 - 31013805
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31013855 ttcaatttttacctctccaatggttttttcattcaacaccctaccccacca 31013805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 19241376 - 19241424
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccac 67  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19241376 ttcaatttttacctctccaatggttttttcattcaacaccctaccccac 19241424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 42317946 - 42317997
Alignment:
Q  17 ctttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42317946 ctttcaatttttacctctccaatag-tttttcattcaacaccctaccccacca 42317997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 30648124 - 30648074
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  30648124 ttcaatttttacctctccaatggttttttcattcaacactctaccccacca 30648074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 7651066 - 7651113
Alignment:
Q  22 aatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||    
T  7651066 aatttttacccctccaatggttttttcattcaacaccctaccccacca 7651113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 23649176 - 23649129
Alignment:
Q  22 aatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||    
T  23649176 aatttttacctcttcaatggttttttcattcaacaccctaccccacca 23649129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 23809395 - 23809442
Alignment:
Q  22 aatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||    
T  23809395 aatttttacctcttcaatggttttttcattcaacaccctaccccacca 23809442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 4219456 - 4219406
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||| ||||    
T  4219456 ttcaatttttacctctccaatggttttttcattcaacactctaccctacca 4219406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 31008396 - 31008346
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||| |||||| |||||||||||||||| ||||||||||||    
T  31008396 ttcaatttttacctttccaatggttttttcattcaacatcctaccccacca 31008346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 32976587 - 32976538
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  32976587 ttcaatttttacctctccaatggtttttt-attcaacaccctaccccacca 32976538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 39008540 - 39008590
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||| |||||||| ||||||||||||||| |||||||||||||    
T  39008540 ttcaatttttacatctccaatggttttttcattcaacgccctaccccacca 39008590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 39238474 - 39238524
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||| |||||||||| ||||||||||||||||| ||||||||||    
T  39238474 ttcaatttttatctctccaataattttttcattcaacaccataccccacca 39238524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 42807011 - 42806961
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||| |||| ||| |||||||||||||||||||||||||||||    
T  42807011 ttcaatttttacatctctaatggttttttcattcaacaccctaccccacca 42806961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 3454796 - 3454845
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||| ||||||||  ||||||||||||||||||||||||||||    
T  3454796 ttcaatttttac-tctccaatgattttttcattcaacaccctaccccacca 3454845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 25670917 - 25670867
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||| ||||||||| || |||||||||||||||||| |||||||    
T  25670917 ttcaatttttaactctccaatggtgttttcattcaacaccctatcccacca 25670867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 27407053 - 27407003
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||| |||||||||||||||  |||||||||||||||| |||||||||||    
T  27407053 ttcaacttttacctctccaatgattttttcattcaacactctaccccacca 27407003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 32363623 - 32363576
Alignment:
Q  22 aatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||| |||||||||||| |||||||| |||| ||||||    
T  32363623 aatttttacctctctaatagttttttcgttcaacactctacaccacca 32363576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 36572431 - 36572381
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||  |||||||| ||||||||||| ||||| |||||||||||    
T  36572431 ttcaatttttatttctccaatggttttttcatttaacactctaccccacca 36572381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 66083 - 66033
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  66083 ttcaatttttacctcttcaataattttttcattcaacaccctaccccacca 66033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 57754 - 57706
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccac 67  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||    
T  57754 ttcaatttttacctcttcaatggttttttcattcaacaccctaccccac 57706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 5334 - 5284
Alignment:
Q  19 ttcaatttttacctctccaatagttttttcattcaacaccctaccccacca 69  Q
    ||||||||||||||||||| | |||||||||||||||||||||||| ||||    
T  5334 ttcaatttttacctctccactggttttttcattcaacaccctaccctacca 5284  T

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