View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11798_low_5 (Length: 348)

Name: NF11798_low_5
Description: NF11798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11798_low_5
NF11798_low_5
[»] scaffold0114 (1 HSPs)
scaffold0114 (10-331)||(5665-5986)


Alignment Details
Target: scaffold0114 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 10 - 331
Target Start/End: Original strand, 5665 - 5986
Alignment:
Q  10 acatcaacaaaaataatgtcccaaaacgtcttgtaaaaatgcccaccaaacccgtctggacccggcgcactatcatcattaagatgaaaaaccgcagact 109  Q
    |||||| || |||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||    
T  5665 acatcagcagaaataatgtcccaaaatgtctagtaaaaatgcccaccaaacccgtcaggacccggcgcactatcaccattaagatcaaaaaccgcagact 5764  T
Q  110 ttatttcagacatcacaggtaagcaacataataaatcattctcagcctccgtaaccaatcttggaaccaattgctctaccatattattagccccacaatc 209  Q
    ||||||||||||||| |||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5765 ttatttcagacatcataggtaaacgacataataaatcagtctcagcctccgtaaccaatcttggaaccaattgctctaccatattattagccccacaatc 5864  T
Q  210 attatcaacgctaaaaatagactgaaaatatgacacaacatggtcctctatctcaattgggtccgagatgacattatccccatcatgaagaatggacata 309  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5865 attatcaacgctaaaaatagactgaaaatatgacacaacatgctcctctatctcaattgggtccgagatgacattatccctatcatgaagaatggacata 5964  T
Q  310 tgtttagagaccgcacgtacct 331  Q
    |||||||| |||||||||||||    
T  5965 tgtttagaaaccgcacgtacct 5986  T

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