View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11798_low_6 (Length: 341)
Name: NF11798_low_6
Description: NF11798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11798_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 49272119 - 49272435
Alignment:
| Q |
17 |
aatattgagttaaagaaattctcttctcctctgttccgttcctctttgttagtgtgtttgtgtttatttatatgtcccactgatatcacaaaaggattgg |
116 |
Q |
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| T |
49272119 |
aatattgagttaaagaaattctcttctcctctgttccgttcctctttgttagtgtgtttgtgtttatttatatgtcccaccgatatcacaaaaggattgg |
49272218 |
T |
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| Q |
117 |
tgagcttccaaaacttaccaatttcattgttttcatcaattcattcggtggtacactaccaccaaaattgggttc-taacgggttactacaaacac-ttg |
214 |
Q |
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| T |
49272219 |
tgagcttccaaaacttaccaatttcattgttttcatcaattcattcggtggtacactaccaccaaaattgggttcttaacgggttactacaaacactttg |
49272318 |
T |
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| Q |
215 |
acatttcaagaaattaacttctagagttgatacctatatacatttgcagaggcaacaaccttgtacattgaatctcttcaacaacaaattaaacaacaca |
314 |
Q |
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| T |
49272319 |
acatttcaagaaattaacttcaagatttgatacctatatacatttgcagaggcaacatccttgtacattcaatctcttcaacaacaaattaaacaacaaa |
49272418 |
T |
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| Q |
315 |
cttcatcccttcctttg |
331 |
Q |
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| T |
49272419 |
cttcatcccttcctttg |
49272435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 13225168 - 13225263
Alignment:
| Q |
112 |
attggtgagcttccaaaacttaccaatttcattgttttcatcaattcattcggtggtacactaccaccaaaattgggttctaacgggttactacaa |
207 |
Q |
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| T |
13225168 |
attggtgaccttccaaaactcaacactttccatattttcaacaactcattcaccggtgcattaccaccaaaactcggttctaacgggttactacaa |
13225263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 13315200 - 13315104
Alignment:
| Q |
112 |
attggtgagcttccaaaacttaccaatttcattgttttcatcaattcattcggtggtacactaccaccaaaattgggttctaacgggttactacaaa |
208 |
Q |
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| T |
13315200 |
attggtgagcttccaaaactcaacactttccaagttttcaacaattcactcattggtagactacccccgaaactcggttccaacgggttgctacaaa |
13315104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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