View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11799_high_2 (Length: 321)
Name: NF11799_high_2
Description: NF11799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11799_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 7 - 307
Target Start/End: Original strand, 27447304 - 27447604
Alignment:
| Q |
7 |
ggacatcatcatacatgatatcagaaatatggacacctaagtgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt |
106 |
Q |
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| T |
27447304 |
ggacatcatcatacatgatatcagaaatatggacacctaagtgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt |
27447403 |
T |
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| Q |
107 |
gagtccagagaggtaatcatttgaagaaggaggaggatgaacaacctcttccttgcactcctcctttttcactgagagaaaaggacagtcttgtttggct |
206 |
Q |
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| T |
27447404 |
gagtccagagaggtaatcatttgaagaaggaggaggatgaacaacctcttccttgcactcctcctttttcactgagagaaaaggacagtcttgtttggct |
27447503 |
T |
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| Q |
207 |
ggtgttgggaaagagttgtcaaaactaagaaacatggaagagtgatcagtaggataatctactatgatctcagggttttgcaagattctacaagtatgat |
306 |
Q |
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| T |
27447504 |
ggtgttgggaaagagttgtcaaaactaagaaacatggaagagtgatcagtaggataatctactatgatctcagggttttgcaagattctacaagtatgat |
27447603 |
T |
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| Q |
307 |
g |
307 |
Q |
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| T |
27447604 |
g |
27447604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 27430027 - 27430201
Alignment:
| Q |
7 |
ggacatcatcatacatgatatcagaaatatggacacctaagtgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt |
106 |
Q |
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| T |
27430027 |
ggacatcatcatacatgatatcaggaatgttgacacctaaatgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt |
27430126 |
T |
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| Q |
107 |
gagtccagagaggtaatcatttgaagaaggaggaggatgaacaacctcttccttgcactcctcctttttcactga |
181 |
Q |
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| T |
27430127 |
tagtccagagaggtaatcatttgaagaaggaggaggatgaacaatctcttccttgcaatcctcccttttcactga |
27430201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 179 - 307
Target Start/End: Original strand, 27430229 - 27430357
Alignment:
| Q |
179 |
tgagagaaaaggacagtcttgtttggctggtgttgggaaagagttgtcaaaactaagaaacatggaagagtgatcagtaggataatctactatgatctca |
278 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||| |||| |||| | |||||||||| |
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| T |
27430229 |
tgagagaaaagggcaatcttgtttggctggtgttgggaaagagttgtcaaagctaaggaacatggaagactggtcacaaggagaatccattatgatctca |
27430328 |
T |
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| Q |
279 |
gggttttgcaagattctacaagtatgatg |
307 |
Q |
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| T |
27430329 |
gagctttgcaagattctacaagtatgatg |
27430357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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