View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11799_low_1 (Length: 519)
Name: NF11799_low_1
Description: NF11799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11799_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 9e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 306 - 503
Target Start/End: Complemental strand, 2949794 - 2949597
Alignment:
| Q |
306 |
ctttcagaagttaacaaatctaaagcaaggtaatcctagtctatttctggtgaaatctgctctaacttggattggaatgtcatccatccaaacgaatgtg |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
2949794 |
ctttcagaagttaacaaatctaaagcaaggtaatcctagtctatgtctggtgaaatctgctctaacttggattgaaatgtcatccatccaaacgaatatg |
2949695 |
T |
|
| Q |
406 |
tcagtggttaaaccaatatttgctaatttatcagaacaacaatttccttctctaaaaataggggtaacaatgagactcatgttttctgctaagatcat |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2949694 |
tcagtggttaaaccaatatttgctaatttatcagaacaacaatttccttctctaaaaataggggtaacaatgagactcatgttttccactaagatcat |
2949597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 2950077 - 2949876
Alignment:
| Q |
1 |
cgtgtgacggtgccgttgtttagatgagtgttaagtttctgaaatcgaattcagtggaagcgattattaagaagctgaagctgaaaaatgaaagagccaa |
100 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2950077 |
cgtgtgacggtgccgttgttgagatgagtgttaaggttctgaaatcgaattcagtggaagcgattattaagaagctgaagctgaaaaatgaaagagccaa |
2949978 |
T |
|
| Q |
101 |
gaagaagatttactaagtggttaattaaattaattttatggtaa--tataatgggcaatgactaaaacactcttattaattttcgtagagtaaaaaacat |
198 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2949977 |
gaagaagatttaccaagtggttaattaaattaattttatggtaatatataatgggcaatgactaaaacactcttattaattttcgtaaagtaaaaaacat |
2949878 |
T |
|
| Q |
199 |
aa |
200 |
Q |
| |
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|| |
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|
| T |
2949877 |
aa |
2949876 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 306 - 503
Target Start/End: Complemental strand, 11037068 - 11036871
Alignment:
| Q |
306 |
ctttcagaagttaacaaatctaaagcaaggtaatcctagtctatttctggtgaaatctgctctaacttggattggaatgtcatccatccaaacgaatgtg |
405 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||| ||||||| |||||||||| | |||||||||| ||||||||||||| |||||| | || || |
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| T |
11037068 |
ctttcagaagtttacaaatctaaagtaaggtaatctaagtctatcactggtgaaatatactctaacttgaattggaatgtcattcatccagataaaagta |
11036969 |
T |
|
| Q |
406 |
tcagtggttaaaccaatatttgctaatttatcagaacaacaatttccttctctaaaaataggggtaacaatgagactcatgttttctgctaagatcat |
503 |
Q |
| |
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| ||||||||||||||||||| ||||||||||| | |||||||||||||||||| ||| | |||||||| ||| | |||||| |||||||| |||| |
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| T |
11036968 |
ttagtggttaaaccaatattttctaatttatcatcaaaacaatttccttctctaatgatatgagtaacaataagatttatgtttcctgctaaggtcat |
11036871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 306 - 455
Target Start/End: Complemental strand, 20692906 - 20692757
Alignment:
| Q |
306 |
ctttcagaagttaacaaatctaaagcaaggtaatcctagtctatttctggtgaaatctgctctaacttggattggaatgtcatccatccaaacgaatgtg |
405 |
Q |
| |
|
|||||| || || ||||| |||||| ||||||| |||||| |||| | ||||||||||||||||||||| ||||||||||| | |||||| |||| |
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|
| T |
20692906 |
ctttcataaatttacaaacctaaagtaaggtaagcctagtttattccaggtgaaatctgctctaacttgaattggaatgtccttcatccatttcaatgaa |
20692807 |
T |
|
| Q |
406 |
tcagtggttaaaccaatatttgctaatttatcagaacaacaatttccttc |
455 |
Q |
| |
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| |||||||||||| |||||| |||||||||||| |||| | |||||||| |
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|
| T |
20692806 |
ttagtggttaaacccatatttcctaatttatcagcacaaaagtttccttc |
20692757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 32902229 - 32902312
Alignment:
| Q |
25 |
tgagtgttaagtttctgaaatcgaattcagtggaagcgattattaagaagctgaagctgaaaaatgaaagagccaagaagaaga |
108 |
Q |
| |
|
||||||||||| ||| ||| |||||||| ||||||||||||||| ||||| ||||||||||||||||||||| |||||||||| |
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| T |
32902229 |
tgagtgttaaggttccgaagtcgaattcggtggaagcgattattgagaaggtgaagctgaaaaatgaaagagtgaagaagaaga |
32902312 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 319 - 458
Target Start/End: Original strand, 19485205 - 19485349
Alignment:
| Q |
319 |
acaaatctaaagcaaggtaatcctagtctattt-----ctggtgaaatctgctctaacttggattggaatgtcatccatccaaacgaatgtgtcagtggt |
413 |
Q |
| |
|
||||||||| |||||||||| ||||| |||||| || ||||||| |||||| |||| ||||||||||||| ||||||||| || || |||||| |
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| T |
19485205 |
acaaatctatagcaaggtaaacctagcctatttaatttctaatgaaatcagctctagcttgaattggaatgtcattcatccaaaccaaatagttagtggt |
19485304 |
T |
|
| Q |
414 |
taaaccaatatttgctaatttatcagaacaacaatttccttctct |
458 |
Q |
| |
|
|||||||||| | || |||||||||| | ||||||| | |||||| |
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| T |
19485305 |
taaaccaataatcgccaatttatcagcataacaattcctttctct |
19485349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 465
Target Start/End: Complemental strand, 45676796 - 45676748
Alignment:
| Q |
417 |
accaatatttgctaatttatcagaacaacaatttccttctctaaaaata |
465 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||| ||||||||| |
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| T |
45676796 |
accaatatttgctaatttatcagcacaacaattaccttccctaaaaata |
45676748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 465
Target Start/End: Complemental strand, 5750502 - 5750454
Alignment:
| Q |
417 |
accaatatttgctaatttatcagaacaacaatttccttctctaaaaata |
465 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| ||||| ||||||||| |
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| T |
5750502 |
accaatatttgctaatctatcagcacaacaattaccttccctaaaaata |
5750454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 461
Target Start/End: Complemental strand, 20631786 - 20631743
Alignment:
| Q |
418 |
ccaatatttgctaatttatcagaacaacaatttccttctctaaa |
461 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||||||||||||| |
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|
| T |
20631786 |
ccaaaatttgctaatttatcagcaaaacaatttccttctctaaa |
20631743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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