View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11799_low_3 (Length: 243)
Name: NF11799_low_3
Description: NF11799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11799_low_3 |
 | |
|
| [»] scaffold0108 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0304 (2 HSPs) |
| | |
|
| [»] scaffold0319 (2 HSPs) |
| | |
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| [»] scaffold0897 (1 HSPs) |
| | |
|
| [»] scaffold0040 (1 HSPs) |
| | |
|
| [»] scaffold0107 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 237
Target Start/End: Original strand, 10787194 - 10787425
Alignment:
| Q |
6 |
ctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagta |
105 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10787194 |
ctgcgatagcgcgcaacgttttttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagta |
10787293 |
T |
|
| Q |
106 |
catcgaagtacagggcggtcacagagccggcatccatagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaactgggt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10787294 |
catcgaagtacagggcggtcacagagccagcgtccatagcattctgcaacaagccttggacggtaggaatgcagggctcagggtctagcatgaactgggt |
10787393 |
T |
|
| Q |
206 |
acaccttaaaatgcagaatatgtgatgtccat |
237 |
Q |
| |
|
|||||| | ||||||||| ||||||||||||| |
|
|
| T |
10787394 |
acacctcagaatgcagaacatgtgatgtccat |
10787425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 6 - 237
Target Start/End: Complemental strand, 14688599 - 14688368
Alignment:
| Q |
6 |
ctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagta |
105 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||| |||| || ||| ||||| ||||||||||||||| | |
|
|
| T |
14688599 |
ctgcgatagcgcgcgacgtttcttgtctccaaaagagaccaaaaatcatgaaaaagtgtagcggtatcaggtgtgataccgtcaagcgccctcagcagca |
14688500 |
T |
|
| Q |
106 |
catcgaagtacagggcggtcacagagccggcatccatagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaactgggt |
205 |
Q |
| |
|
| ||||| |||||||||||||||||||| |||||||| ||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14688499 |
cgtcgaaatacagggcggtcacagagccagcatccatggcattcttcaacaaaccttggatggtagggatgcagggctcagggtccagcatgaactgggt |
14688400 |
T |
|
| Q |
206 |
acaccttaaaatgcagaatatgtgatgtccat |
237 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| |
|
|
| T |
14688399 |
gcacctcaaaatgcagaacatgtgatgtccat |
14688368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 9 - 237
Target Start/End: Complemental strand, 7360598 - 7360370
Alignment:
| Q |
9 |
cgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacat |
108 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||| ||||||||||||||||| ||||| |||| || ||||||||| |||||||||||||||||| | |
|
|
| T |
7360598 |
cgatagcgcgcgacgtttcgtgtctccaaaagagacaagaaatcatgaaaaagtgcagcggcatcaggtgtgacaccgtcaagcgccctcagcagtacgt |
7360499 |
T |
|
| Q |
109 |
cgaagtacagggcggtcacagagccggcatccatagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaactgggtaca |
208 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| ||||||| ||| || |||||||||||||| | |||||||||||| |||||||||||||||||||| |
|
|
| T |
7360498 |
cgaagtacagagcggtcacagagccagcatccatggcattcttcaagaaaccttggatggtagggacgcagggctcaggatccagcatgaactgggtaca |
7360399 |
T |
|
| Q |
209 |
ccttaaaatgcagaatatgtgatgtccat |
237 |
Q |
| |
|
||| ||||||||||| ||||| ||||||| |
|
|
| T |
7360398 |
cctcaaaatgcagaacatgtggtgtccat |
7360370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 6 - 237
Target Start/End: Original strand, 1730012 - 1730243
Alignment:
| Q |
6 |
ctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagta |
105 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
1730012 |
ctgcgatagcgcgcgacgtttcttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacatcgttaagcaccctcagcagta |
1730111 |
T |
|
| Q |
106 |
catcgaagtacagggcggtcacagagccggcatccatagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaactgggt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||| || ||| ||||||| ||||||||| ||||||||||||| |||||||||||| || |
|
|
| T |
1730112 |
catcgaagtacagggcggtcacagagccagcgtccatagcattcttcagcaaaccttggacggtaggaatacagggctcagggtacagcatgaactgagt |
1730211 |
T |
|
| Q |
206 |
acaccttaaaatgcagaatatgtgatgtccat |
237 |
Q |
| |
|
|||||| ||||||||||| || |||||||||| |
|
|
| T |
1730212 |
acacctcaaaatgcagaacatatgatgtccat |
1730243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 22338640 - 22338584
Alignment:
| Q |
93 |
gccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
149 |
Q |
| |
|
|||||||||| ||||| ||||| || ||| |||||||||| ||||||||||||||| |
|
|
| T |
22338640 |
gccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagcattc |
22338584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 6 - 237
Target Start/End: Complemental strand, 14329130 - 14328899
Alignment:
| Q |
6 |
ctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagta |
105 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| |||| || ||| ||||| ||||||||||||||||| |
|
|
| T |
14329130 |
ctgcgatagcgcgcgacgtttcgtgtctccaaaagagaccagaaatcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagta |
14329031 |
T |
|
| Q |
106 |
catcgaagtacagggcggtcacagagccggcatccatagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaactgggt |
205 |
Q |
| |
|
| ||||||||||| |||||||||||||| |||||||| ||||||| || ||| |||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14329030 |
cgtcgaagtacagagcggtcacagagccagcatccatggcattcttcagcaaaccttagatggtagggatgcagggctcagggtccagcatgaactgggt |
14328931 |
T |
|
| Q |
206 |
acaccttaaaatgcagaatatgtgatgtccat |
237 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||| |
|
|
| T |
14328930 |
acacctcaaaatgcagaacatgtgatgtccat |
14328899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 18166769 - 18166626
Alignment:
| Q |
3 |
tccctgcgatagcgcgcaacgtttctt-gtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagc |
101 |
Q |
| |
|
||||||||||| |||||||| ||| || ||||||||||||||||| || |||| || ||| ||||| |||| | ||| ||||| |||||| |||||| |
|
|
| T |
18166769 |
tccctgcgataacgcgcaacatttttttgtctccaaaagagaccaaaagtcattgaagagttcagcggtatcaggagtgataccgtcaagcgctctcagc |
18166670 |
T |
|
| Q |
102 |
agtacatcgaagtacagggcggtcacagagccggcatccatagc |
145 |
Q |
| |
|
| |||||| ||||| || ||||||||||| || ||||||||||| |
|
|
| T |
18166669 |
attacatcaaagtaaagagcggtcacagaaccagcatccatagc |
18166626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 51 - 237
Target Start/End: Complemental strand, 41375532 - 41375346
Alignment:
| Q |
51 |
tcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattct |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
41375532 |
tcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccagcgtccatagcattct |
41375433 |
T |
|
| Q |
151 |
gcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat |
237 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
41375432 |
tcagcaagccttggacggtaggaatgcagggctcagggtccagcatgaactgggtacacctcaaaatgcagaacatatgatgtccat |
41375346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 3 - 237
Target Start/End: Original strand, 22081008 - 22081242
Alignment:
| Q |
3 |
tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagca |
102 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| | |||| || ||| ||| | |||||||||||||| |
|
|
| T |
22081008 |
tccctgcgatagcgcgcgacgtttcttgtctccaaaagagaccagaaatcatgaaagagttcagcagtatcaggtgtgataccatcaagcgccctcagca |
22081107 |
T |
|
| Q |
103 |
gtacatcgaagtacagggcggtcacagagccggcatccatagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaactg |
202 |
Q |
| |
|
|||| |||||||| || ||||||||||| || |||||||| || |||| | || |||| || |||||||||||| |||||| |||| ||| || || |
|
|
| T |
22081108 |
gtacgtcgaagtagagagcggtcacagaaccagcatccatggcgttcttaagaaaacctttgacggtaggaatgcatggctcaatatccaacataaattg |
22081207 |
T |
|
| Q |
203 |
ggtacaccttaaaatgcagaatatgtgatgtccat |
237 |
Q |
| |
|
|||||| || |||||||| || || |||||||||| |
|
|
| T |
22081208 |
ggtacatctcaaaatgcaaaacatatgatgtccat |
22081242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 148
Target Start/End: Complemental strand, 22799844 - 22799785
Alignment:
| Q |
89 |
aagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcatt |
148 |
Q |
| |
|
|||||||||||||| ||||| ||||| || ||| |||||||||| |||||||||||||| |
|
|
| T |
22799844 |
aagcgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagcatt |
22799785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 24954749 - 24954977
Alignment:
| Q |
9 |
cgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacat |
108 |
Q |
| |
|
||||| ||||| ||||||| |||||||| ||||||||||||||||||||||||| |||||| |||| || ||| ||||| |||||||||||||||||| | |
|
|
| T |
24954749 |
cgatatcgcgcgacgtttcgtgtctccagaagagaccagaaatcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgt |
24954848 |
T |
|
| Q |
109 |
cgaagtacagggcggtcacagagccggcatccatagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaactgggtaca |
208 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| ||||||| || |||||||||||||||||| ||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
24954849 |
cgaagtacagagcggtcacagagccagcatccatggcattcttcagcaagccttggatggtagggatgcaaggctcagggtccaacatgaactgggtaca |
24954948 |
T |
|
| Q |
209 |
ccttaaaatgcagaatatgtgatgtccat |
237 |
Q |
| |
|
||| ||||||||||| ||||| ||||||| |
|
|
| T |
24954949 |
cctcaaaatgcagaacatgtgttgtccat |
24954977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 23195991 - 23195850
Alignment:
| Q |
3 |
tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagca |
102 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||||||||||||||| || |||| || ||| ||||| |||| | ||| ||||| |||||| ||||||| |
|
|
| T |
23195991 |
tccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaagtcattgaagagttcagcggtatcaggagtgataccgtcaagcgctctcagca |
23195892 |
T |
|
| Q |
103 |
gtacatcgaagtacagggcggtcacagagccggcatccatag |
144 |
Q |
| |
|
|||||| ||||| || ||||||||||| || |||||||||| |
|
|
| T |
23195891 |
ttacatcaaagtaaagagcggtcacagaaccagcatccatag |
23195850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 149
Target Start/End: Complemental strand, 23621595 - 23621449
Alignment:
| Q |
3 |
tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagca |
102 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||||||||||||||| || ||| || ||| ||||| ||| | ||| ||||| |||||| ||||||| |
|
|
| T |
23621595 |
tccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaagtcaatgaagagttcagcggtgtcaggagtgataccgtcaagcgctctcagca |
23621496 |
T |
|
| Q |
103 |
gtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
149 |
Q |
| |
|
|||||| ||||| || ||||||||||| || ||||||||||||||| |
|
|
| T |
23621495 |
ttacatcaaagtaaagagcggtcacagaaccagcatccatagcattc |
23621449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 38947 - 39089
Alignment:
| Q |
3 |
tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagca |
102 |
Q |
| |
|
||||||||||| |||||||| ||| | ||||||||||||||||| || |||| |||||| ||||| |||| | ||| ||||| |||||| ||||||| |
|
|
| T |
38947 |
tccctgcgataacgcgcaacatttttcgtctccaaaagagaccaaaagtcattgaaaagttcagcggtatcaggagtgataccgtcaagcgctctcagca |
39046 |
T |
|
| Q |
103 |
gtacatcgaagtacagggcggtcacagagccggcatccatagc |
145 |
Q |
| |
|
|||||| ||||| || ||||||||||| || ||||||||||| |
|
|
| T |
39047 |
ttacatcaaagtaaagagcggtcacagaaccagcatccatagc |
39089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 32791 - 32649
Alignment:
| Q |
3 |
tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagca |
102 |
Q |
| |
|
||||||||||| |||||||| ||| | ||||||||||||||||| || |||| |||||| ||||| |||| | ||| ||||| |||||| ||||||| |
|
|
| T |
32791 |
tccctgcgataacgcgcaacatttttcgtctccaaaagagaccaaaagtcattgaaaagttcagcggtatcaggagtgataccgtcaagcgctctcagca |
32692 |
T |
|
| Q |
103 |
gtacatcgaagtacagggcggtcacagagccggcatccatagc |
145 |
Q |
| |
|
|||||| ||||| || ||||||||||| || ||||||||||| |
|
|
| T |
32691 |
ttacatcaaagtaaagagcggtcacagaaccagcatccatagc |
32649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 150
Target Start/End: Original strand, 74471 - 74618
Alignment:
| Q |
3 |
tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagca |
102 |
Q |
| |
|
|||||||||||||||||||| ||| | ||||||||||||||||| || |||| || ||| ||||| |||| || ||| ||||| ||| || |||| || |
|
|
| T |
74471 |
tccctgcgatagcgcgcaacatttttcgtctccaaaagagaccaaaactcattgaagagttcagcggtatcaggtgtgataccgtcaagtgctctcacca |
74570 |
T |
|
| Q |
103 |
gtacatcgaagtacagggcggtcacagagccggcatccatagcattct |
150 |
Q |
| |
|
|||||| ||||| || ||||||||||| || ||||||||||| |||| |
|
|
| T |
74571 |
ttacatcaaagtaaagagcggtcacagaaccagcatccatagcgttct |
74618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 149
Target Start/End: Complemental strand, 12422 - 12276
Alignment:
| Q |
3 |
tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagca |
102 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||||||||||||||| || |||| |||||| || || |||| | ||| | ||| |||||||||||||| |
|
|
| T |
12422 |
tccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaagtcattgaaaagttcagtggtatcaggagtgatatcgtcaagcgccctcagca |
12323 |
T |
|
| Q |
103 |
gtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
149 |
Q |
| |
|
||||| ||||| || ||| |||||||||| || |||||||||||| |
|
|
| T |
12322 |
ttacatgaaagtaaagagcgctcacagagccagcgtccatagcattc |
12276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 149
Target Start/End: Complemental strand, 18173 - 18027
Alignment:
| Q |
3 |
tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagca |
102 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||||||||||||||| || |||| |||||| || || |||| | ||| | ||| |||||||||||||| |
|
|
| T |
18173 |
tccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaagtcattgaaaagttcagtggtatcaggagtgatatcgtcaagcgccctcagca |
18074 |
T |
|
| Q |
103 |
gtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
149 |
Q |
| |
|
||||| ||||| || ||| |||||||||| || |||||||||||| |
|
|
| T |
18073 |
ttacatgaaagtaaagagcgctcacagagccagcgtccatagcattc |
18027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 149
Target Start/End: Complemental strand, 14562372 - 14562226
Alignment:
| Q |
3 |
tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagca |
102 |
Q |
| |
|
||||||||||| |||||||| ||| | ||||||||||||||||| || |||| |||||| || || |||| | ||| ||||| || ||||||||||| |
|
|
| T |
14562372 |
tccctgcgataacgcgcaacatttttcgtctccaaaagagaccaaaagtcattgaaaagttcagtggcatcaggagtgataccgtcaatcgccctcagca |
14562273 |
T |
|
| Q |
103 |
gtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
149 |
Q |
| |
|
|||||| ||||| || ||| |||||||||| || |||||||||||| |
|
|
| T |
14562272 |
ttacatcaaagtaaagagcgctcacagagccagcgtccatagcattc |
14562226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 13284514 - 13284372
Alignment:
| Q |
3 |
tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagca |
102 |
Q |
| |
|
||||||||||| || ||||| || | ||||||||||||||||| || |||| || ||| || || |||| | ||| ||||| |||||||||||||| |
|
|
| T |
13284514 |
tccctgcgataacgagcaacattcttcgtctccaaaagagaccaaaagtcattgaagagttcagtggtatcaggagtgataccgtcaagcgccctcagca |
13284415 |
T |
|
| Q |
103 |
gtacatcgaagtacagggcggtcacagagccggcatccatagc |
145 |
Q |
| |
|
|||||| ||||| || ||| |||||||||| || |||||||| |
|
|
| T |
13284414 |
ttacatcaaagtaaagagcgctcacagagccagcgtccatagc |
13284372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 14742016 - 14741960
Alignment:
| Q |
89 |
aagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagc |
145 |
Q |
| |
|
|||||||||||||| ||||| ||||| || ||| |||||||||| ||||||||||| |
|
|
| T |
14742016 |
aagcgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagc |
14741960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 19439 - 19584
Alignment:
| Q |
3 |
tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagca |
102 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||||||||||||||| || |||| |||||| || || |||| | ||| ||||| || |||| |||| | |
|
|
| T |
19439 |
tccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaagtcattgaaaagttcagtggcatcaggagtgataccgtcaatcgccatcagaa |
19538 |
T |
|
| Q |
103 |
gtacatcgaagtacagggcggtcacagagccggcatccatagcatt |
148 |
Q |
| |
|
|||||| ||||| || ||| |||||||||| || ||||||||||| |
|
|
| T |
19539 |
ttacatcaaagtaaagagcgctcacagagccagcgtccatagcatt |
19584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 13680 - 13746
Alignment:
| Q |
83 |
accgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
149 |
Q |
| |
|
||||| || ||||||||||| |||||| ||||| || ||| |||||||||| || |||||||||||| |
|
|
| T |
13680 |
accgtcaatcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatagcattc |
13746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 199
Target Start/End: Complemental strand, 3985 - 3789
Alignment:
| Q |
3 |
tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagca |
102 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||||||||||||||| || |||| || ||| ||||| |||| | ||| |||| ||||| ||||||| |
|
|
| T |
3985 |
tccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaagtcattgaagagttcagcggtatcaggagtgatgccgtcgagcgctctcagca |
3886 |
T |
|
| Q |
103 |
gtacatcgaagtacagggcggtcacagagccggcatccatagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaa |
199 |
Q |
| |
|
|||||| ||||| || ||||||||||| || |||||||| || |||| | || | | ||||||||||||||| |||||| ||||||||||| |
|
|
| T |
3885 |
ttacatcaaagtaaagagcggtcacagaaccagcatccatggcgttcttaagcagacgcttgatggtaggaatgcatggctcaacatccagcatgaa |
3789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 149
Target Start/End: Original strand, 36021 - 36167
Alignment:
| Q |
3 |
tccctgcgatagcgcgcaacgtttcttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagca |
102 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||||||||||||| |||| || ||| || | |||| | ||| ||||| |||||||||||||| |
|
|
| T |
36021 |
tccctgcgataacgcgcaacattctttgtctccaaaagagaccagaagtcattgaagagttcagtgatatcaggagtgataccgtcaagcgccctcagca |
36120 |
T |
|
| Q |
103 |
gtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
149 |
Q |
| |
|
|||||| ||||| || ||| | || || || || |||||||||||| |
|
|
| T |
36121 |
ttacatcaaagtaaagagcgtttacggaaccagcgtccatagcattc |
36167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 9280 - 9340
Alignment:
| Q |
89 |
aagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
149 |
Q |
| |
|
|||||||||||||| | ||| ||||| || ||| |||| ||||||||||||||||||||| |
|
|
| T |
9280 |
aagcgccctcagcatgatatcaaagtagagtgcgctcacggagccggcatccatagcattc |
9340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 384862 - 384922
Alignment:
| Q |
89 |
aagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
149 |
Q |
| |
|
||||||||||| || ||||| ||||| || || |||||||||||||||||||||||||| |
|
|
| T |
384862 |
aagcgccctcaacatgacatcaaagtagagctcgctcacagagccggcatccatagcattc |
384922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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