View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1179_high_5 (Length: 348)
Name: NF1179_high_5
Description: NF1179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1179_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 6635427 - 6635684
Alignment:
| Q |
7 |
tccaacaatattgtactagaactattaaaattaacaatagagctttatccgtttggaacaatggtgtcgctttaatattagtcctcttaacatttttcan |
106 |
Q |
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| T |
6635427 |
tccaacaacattgtactagaactattaaaattaacaatagaactttatccgtttggaacaatggtgtcactttaatattagtcctcttaacatttttcat |
6635526 |
T |
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| Q |
107 |
nnnnnnnnncttcatttctttaatatcagtcccctcgacatttttcatttctaacacatcatatgtcataacacaaaagtcatcacatggactataaatt |
206 |
Q |
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| T |
6635527 |
ttttttt--cttcatttctttaatatcagtctcctagacatttttcatttctaacacatcaaatgtcataacacaaaagtcatcacatggactataaatt |
6635624 |
T |
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| Q |
207 |
aatatcctcatttgcgccaccaatatttctttccaacaccgtcgaaaatgtatgtacttga |
267 |
Q |
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| T |
6635625 |
aatatcctcatttgcgccactaatatttctttccaac-tcgtcgaaaatgtatgtatttga |
6635684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 267 - 348
Target Start/End: Original strand, 6635738 - 6635826
Alignment:
| Q |
267 |
atcaatgacactctataaagaggtgtggagttttctcattttgttgccaacat-------aaaatgaatcacacttgatttttctttaa |
348 |
Q |
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| T |
6635738 |
atcaatgacactctataaagaggtgtgaagttttctcattttgtggccaacataaaacacaaaatgaatcacacttgatttttctttaa |
6635826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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