View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1179_high_6 (Length: 328)
Name: NF1179_high_6
Description: NF1179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1179_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 299
Target Start/End: Original strand, 1849302 - 1849598
Alignment:
| Q |
8 |
caccacagacataacaaaaagaaaatgaatgaaaattagattcgaagaatttgtaaaagaaacttcttatagccacagcatagacgcatataaacnnnnn |
107 |
Q |
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| T |
1849302 |
caccaaagacataacaaaaagaaaatgaatgaaaattagattcgaagaatttgtaaaagaaacttcttatagccacagcatagacgcatataaacttttt |
1849401 |
T |
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| Q |
108 |
nnnn-----attacaaaagggtttaacacccaaatagacgcatattaactctgaataaatacatacatgaaatctctaagcacatgtttagttagaagag |
202 |
Q |
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| T |
1849402 |
tttttttttattacaaaagggtttaacacccaaatagacgcatattaactctgaataaatacatacatgaaatctctaagcacatgtttagttagaagag |
1849501 |
T |
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| Q |
203 |
atgacatgtaagaagaaaataaaatagaacgagaagatcacaaaagaagagatttgcaactttgatgcatttgattgaacacttttcatgtgccatc |
299 |
Q |
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| T |
1849502 |
atgacatgtaagaagaaaaaaaaatagaacgagaagatcacaaaagaagagatttgcaactttgatgcatttgattgaacacttttcatgtgccatc |
1849598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 1836839 - 1836879
Alignment:
| Q |
218 |
aaaataaaatagaacgagaagatcacaaaagaagagatttg |
258 |
Q |
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| T |
1836839 |
aaaaaaaaatagaacgaaaagatcacaaaagaagagatttg |
1836879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 1834197 - 1834245
Alignment:
| Q |
20 |
aacaaaaagaaaatgaatgaaaattagattcgaagaatttgtaaaagaaa |
69 |
Q |
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| T |
1834197 |
aacagaaagaaaaggaatgaaaat-atattcgaagaatttgtaaaagaaa |
1834245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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